Information on HCK

Basic details

Alt. symbols: JTK9

Approved name: HCK proto-oncogene, Src family tyrosine kinase
Alt. names: hemopoietic cell kinase

Location: 20q11.21: 32052197 - 32101856 (+)
Gene type: protein_coding, 8 transcripts.

Scores: LoFtool: 0.176000 | pLI: 0.01976000 | LOEUF: 0.510

HGNC: 4840

NCBI: 3055, RefSeq: NG_029471.1

Ensembl: ENSG00000101336.18

LRG_ | Status: none

OMIM: 142370

Expression | ProteinAtlas

Normal function

HCK encodes hematopoietic cell kinase (HCK), a member of the SRC family of non-receptor tyrosine kinases (NRTKs). It is predominantly expressed in myeloid and B cell lineages and is implicated in phagocyte migration and degranulation, as well as receptor-mediated signaling (PMID: 12029088). However, these roles have mostly been elucidated using double and triple knockout mice for multiple SRC family NRTKs and the specific roles of each kinase have been difficult to dissect (PMID: 18385944). Hck is expressed as 2 isoforms - p59Hck is associated with the plasma membrane where it triggers the formation of protrusions and p61Hck is associated with lysosomal membranes that contribute to the formation of podosome rosettes (PMID: 19897576). Cougoule et al. (2010) showed that Hck-deficient macrophages have altered in vitro migration and in vivo tissue invasion capacities (PMID: 19897576). Moreover, Hck appears to play an important role in proliferative signaling downstream of IL-6/gp130 (PMID: 26087188). In B cell development, HCK is generally expressed in earlier B-cell progenitors and downregulated in mature B cells (PMID: 10658677). However, in MYD88-driven B-cell lymphomas (Waldenström macroglobulinemia and activated B-cell subtype diffuse large B-cell lymphomas) that represent later stages of B-cell differentiation, HCK is aberrantly overexpressed and triggers multiple growth and survival pathways (PMID: 31935288).

Dysfunction and disease

Kanderova et al. (2022) identified a heterozygous de novo HCK nonsense mutation (Y515X) in a female with early onset cutaneous vasculitis and chronic pulmonary inflammation progressing to fibrosis (PMID: 34536415). As a neonate, the patient develop petechial and purpuric skin lesions and was found to have vasculitis with perivascular neutrophil and macrophage infiltration. She then developed hepatosplenomegaly around 21 months of age and bilateral lung parenchymal infiltration with persistent ep isodes of alveolar hemorrhage. Though the patient’s clinical findings were responsive to ruxolitinib treatment, she developed recurrent infectious complications and eventually passed away from respiratory failure at age 17. the authors showed that the mutation led to a truncated protein lacking 12 amino acids, including loss of a key residue (Tyr522) that mediates intramolecular inhibition of kinase activity. Over-expression of the mutant allele in cell lines showed that it causes increased kinase activity with hyperphosphorylation in whole-cell lysates. The authors also showed that this hyperactive form of HCK led to increased integrin expression, chemotaxis, and migration as well as inflammatory cytokine production (IL-1β, IL-6, IL-8, TNF-alpha), likely accounting for the patient’s lung infiltration and inflammation. [Load More]

[Reviewed by Parsa Alizadeh on 2023-12-02 12:52:56]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
EOPCV Early-onset pulmonary and cutaneous vasculitis ADdict. icon Gain of Function - 2 (2 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of HCK

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000375852.5 CCDS33460 Select protein_coding 13 Yes 2088 NM_002110
207 ENST00000520553.5 CCDS54455 protein_coding 13 No 2101 NM_001172129,NM_001172132
208 ENST00000629881.2 CCDS54455 protein_coding 14 No 1969 NM_001172133
203 ENST00000375862.7 CCDS54453 protein_coding 13 No 1806 NM_001172130
206 ENST00000518730.5 CCDS54456 protein_coding 13 No 1742 NM_001172131

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in HCK

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

Find laboratories offering tests

Check