Information on IFIH1

Basic details

Alt. symbols: MDA-5 | Hlcd | MDA5 | IDDM19

Approved name: interferon induced with helicase C domain 1
Alt. names: helicard, melanoma differentiation-associated gene 5

Location: 2q24.2: 162267074 - 162318684 (-)
Gene type: protein_coding, 8 transcripts.

Scores: LoFtool: 0.992000 | pLI: 0.00000000 | LOEUF: 1.548

HGNC: 18873

NCBI: 64135, RefSeq: NG_011495.1

Ensembl: ENSG00000115267.10

LRG_1235 | Status: public

OMIM: 606951

Expression | ProteinAtlas

Normal function

IFIH1 encodes MDA5, an innate immune receptor that acts as a cytoplasmic sensor of viral nucleic acids and activates type I interferon (IFN) signaling through the MAVS adaptor molecule. Therefore, it plays a major role in sensing viral infection and in the activation cascade of antiviral responses, including the induction of type I IFNs and pro-inflammatory cytokines.

Dysfunction and disease

Monoallelic IFIH1 missense gain-of-function (GOF) mutations are associated with a primary type I interferonopathy encompassing a spectrum of autoinflammatory phenotypes including Aicardi-Goutieres syndrome (AGS) 7 [MIM:615846] and Singleton-Merten syndrome (SMS) 1 [MIM:182250]. Though both involve systemic type I IFN activation, AGS patients tend to present with more severe neurological features, while SGS patients are typical affected by issues involving their vasculature, teeth, eyes, bone and joints. IFIH1 GOF mutations can also be associated with the development of autoimmunity, most prominently a lupus-like illness involving dysgammaglobulinemia, autoantibody production, and cytopenias (PMID: 31898846). SNPs in IFIH1 have also been linked to a variety of autoimmune disorders including systemic lupus erythematosus (SLE) in GWAS and other studies (PMID: 29930297, 21705624). In contrast, mono- and bi-allelic IFIH1 loss-of-function (LOF) variants have been implicated in the development of VEO-IBD (PMID: 34185153), as well as susceptibility to common respiratory viral infections (PMID: 28716935) and protection against the development of type 1 diabetes (PMID: 19264985, 20844740). [Load More]

[Reviewed by Xiao P. Peng on 2023-12-10 04:39:25]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
AGS7 Aicardi-Goutieres syndrome 7 ADdict. icon Gain of Function 615846www icon 0 (0 fams)
SGMRT1 Singleton-Merten syndrome 1 ADdict. icon 182250www icon 0 (0 fams)
IMD95 Immunodeficiency 95 ARdict. icon Loss of Function 619773www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of IFIH1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
206 ENST00000649979.2 1 CCDS2217 Select protein_coding 16 Yes 3581 NM_022168

Published variants

Found 3 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
I923V EX14 3144 c.2767A>G p.Ile923Val missense_variant Uncertain significance 0
E627* EX10 2256 c.1879G>T p.Glu627Ter stop_gained Risk allele 0
EX8+1G>C IN8 c.1641+1G>C Exon-skipping ALTERS SPLICING! Uncertain significance 1

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in IFIH1

ID Year Title Journal PMID Variants
101 2017 Severe viral respiratory infections in children with IFIH1 l... PNAS 28716935 1
118 2021 Establishing the Molecular Diagnoses in a Cohort of 291 Pati... Front. Immunol. 34975878 1
136 2010 Reduced expression of IFIH1 is protective for type 1 diabete... Plos one 20844740 2
137 2010 Loss-of-function mutations E627X and I923V of IFIH1 are asso... Hum. Immunol. 20736039 1
139 2011 Polymorphisms in the innate immune IFIH1 gene, frequency of ... Plos one 22110759 1
188 2010 Carriers of rare missense variants in IFIH1 are protected fr... J. Investig. Dermat. 20668468 1
189 2017 The A946T variant of the RNA sensor IFIH1 mediates an interf... Nat. Immun. 28553952 1
190 2017 A rare coding allele in IFIH1 is protective for psoriatic ar... Ann. Rheum. Dis. 28501801 1

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