Information on IFIH1
Basic details
Alt. symbols: MDA-5 | Hlcd | MDA5 | IDDM19
Approved name: interferon induced with helicase C domain 1
Alt. names: helicard, melanoma differentiation-associated gene 5
Location: 2q24.2: 162267074 - 162318684 (-)
Gene type: protein_coding, 8 transcripts.
Scores: LoFtool: 0.992000 | pLI: 0.00000000 | LOEUF: 1.548
Normal function
IFIH1 encodes MDA5, an innate immune receptor that acts as a cytoplasmic sensor of viral nucleic acids and activates type I interferon (IFN) signaling through the MAVS adaptor molecule. Therefore, it plays a major role in sensing viral infection and in the activation cascade of antiviral responses, including the induction of type I IFNs and pro-inflammatory cytokines.
Dysfunction and disease
Monoallelic IFIH1 missense gain-of-function (GOF) mutations are associated with a primary type I interferonopathy encompassing a spectrum of autoinflammatory phenotypes including Aicardi-Goutieres syndrome (AGS) 7 [MIM:615846] and Singleton-Merten syndrome (SMS) 1 [MIM:182250]. Though both involve systemic type I IFN activation, AGS patients tend to present with more severe neurological features, while SGS patients are typical affected by issues involving their vasculature, teeth, eyes, bone and joints. IFIH1 GOF mutations can also be associated with the development of autoimmunity, most prominently a lupus-like illness involving dysgammaglobulinemia, autoantibody production, and cytopenias (PMID: 31898846). SNPs in IFIH1 have also been linked to a variety of autoimmune disorders including systemic lupus erythematosus (SLE) in GWAS and other studies (PMID: 29930297, 21705624). In contrast, mono- and bi-allelic IFIH1 loss-of-function (LOF) variants have been implicated in the development of VEO-IBD (PMID: 34185153), as well as susceptibility to common respiratory viral infections (PMID: 28716935) and protection against the development of type 1 diabetes (PMID: 19264985, 20844740). [Load More]
[Reviewed by Xiao P. Peng on 2023-12-10 04:39:25]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of IFIH1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
206 | ENST00000649979.2 | 1 | CCDS2217 | Select | protein_coding | 16 | Yes | 3581 | NM_022168 |
Published variants
Found 3 variants
Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |