Information on IKBKB
Alt. symbols: IKK2 | NFKBIKB | IKK-beta | IKKB
Approved name: inhibitor of nuclear factor kappa B kinase subunit beta
Alt. names: inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
Location: 8p11.21: 42271302 - 42332460 (+)
Gene type: protein_coding, 33 transcripts.
Scores: LoFtool: 0.698000 | pLI: 0.99878670 | LOEUF: 0.290
Gene Ontology (GO)
- Molecular function: protein serine/threonine kinase activity [GO:0004674]; IkappaB kinase activity [GO:0008384]
- Cell component: cytoplasm [GO:0005737]; IkappaB kinase complex [GO:0008385]
- Biological process: tumor necrosis factor-mediated signaling pathway [GO:0033209]; positive regulation of transcription by RNA polymerase II [GO:0045944]; peptidyl-serine phosphorylation [GO:0018105]; positive regulation of NF-kappaB transcription factor activity [GO:0051092]
Normal function
IKBKB is a serine kinase that plays an essential role in the NF-kappa-B signalling pathway, which is activated by multiple stimuli such as inflammatory cytokines, bacterial or viral products, DNA damage or other cellular stress (PubMed:30337470). IKBKB acts as part of the canonical IKK complex in the conventional pathway of NF-kappa-B activation.
Dysfunction and disease
Biallelic nonsense or insertion mutations in IKBKB leading to a loss of IKK2 protein expression result in severe combined immunodeficiency (SCID): Immunodeficiency 15B [MIM:615592]; whereas monoallelic gain-of-function mutations, such as the p.Val203Ile (Cardinez et al. 2018, PMID:30337470), can cause a less severe form combined immune deficiency, namely Immunodeficiency 15A [MIM:618204]. The p.Val203Ile variant is the only GOF variant known to date, and it was found in four cases from two unrel ated families. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2024-03-19]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of IKBKB
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
215 | ENST00000520655.5 | nonsense_mediated_decay | No | 3777 | XM_047421764 | ||||
217 | ENST00000520835.7 | protein_coding | 21 | No | 2406 | NM_001190720 | |||
216 | ENST00000520810.6 | 1 | CCDS6128 | Select | protein_coding | 22 | Yes | 3938 | NM_001242778,NM_001556 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in IKBKB
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.
ID | Year | Title | Journal | PMID | Variants |
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