Information on IL2RG

Basic details

Alt. symbols: SCIDX1 | IMD4 | CIDX | CD132

Approved name: interleukin 2 receptor subunit gamma
Alt. names: severe combined immunodeficiency, combined immunodeficiency, X-linked, interleukin 2 receptor, gamma

Location: Xq13.1: 71107404 - 71112108 (-)
Gene type: protein_coding, 8 transcripts.

Scores: LoFtool: 0.119000 | pLI: 0.95776447 | LOEUF: 0.209

HGNC: 6010

NCBI: 3561, RefSeq: NG_009088.1

Ensembl: ENSG00000147168.14

LRG_150 | Status: public

OMIM: 308380

Expression | ProteinAtlas

Normal function

IL2RG encodes the common gamma chain subunit of at least 6 unique cytokine receptors, including those for IL-2, IL-4, IL-7, IL-9, IL-15 and IL-21. In particular, signaling through heterotrimeric IL-2 receptor affects the growth and differentiation of lymphocytes, glioma cells, and monocyte lineage cells.

Dysfunction and disease

X-linked germline mutations in IL2RG cause a spectrum of immunodeficiencies ranging from 'typical' T-B+NK- severe combined immunodeficiency (SCID) [OMIM: 300400] to 'atypical' forms that are attenuated or delayed-onset, often featuring variable combined immunodeficiency (CID) accompanied by immune dysregulation and/or autoimmunity [OMIM: 312863]. In places without newborn screening, 'typical' X-SCID presents in male infants as failure to thrive, diarrhea, dermatitis, oral/diaper candidiasis, and recurrent, severe and/or persistent infections, particularly by opportunistic organisms(GeneReviews). Disseminated infections and neurologic manifestations are rarer. Immunophenotyping is notable for low numbers of T and NK cell subsets compared to age-matched normal controls, virtual absence of naïve CD45RA+ cells, and absent T-cell responses to stimulation by mitogens and antigens. 'Atypical' X-SCID presentations may vary and include recurrent sinorespiratory infections with bronchiectasis; Omenn syndrome, an immune dysregulatory condition characterized by generalized erythroderma, hepatosplenomegaly, lymphadenopathy, elevated serum IgE and/or increased eosinophils, CID with recurrent infections and skin manifestations such as warts and dermatitis starting within the first years of life; immune dysregulation and autoimmunity associated with arthritis, rashes, gastrointestinal malabsorption, and/or short stature; or EBV-related lymphoproliferative complications including lymphoma or severe verrucous lesions (GeneReviews). Of note, IL2RG mutations remain the most common cause of SCID but accounted for no more than 20% of all cases in one study of 11 newborn screen programs in the US from 2008-2013 (PMID: 25138334). In general, there is a correlation between the genotype and the clinical and immunophenotypic severity of disease, with 'typical' disease associated with functionally null mutations resulting in a T–B+NK– immunophenotype, and 'atypical' disease due to hypomorphic mutations resulting production of a small amount of gene product or residual protein activity (GeneReviews). One notable exception is the Arg222Cys mutation, associated with both 'typical' and 'atypical' X-SCID phenotypes - all reported individuals with this variant have had opportunistic infections within the first year of life, despite the presence of nearly normal numbers of T cells and NK cells (PMID: 25042067); newborn screening may give false negative results (PMID: 15687233, 30683812, 33712943). Of note, somatic reversion/mosaicism has been described (PMID: 18728247, 26407811, 31186537); regulatory region variants may result in an atypical X-SCID immunophenotype (PMID: 28770187); and at least 5 large deletions have been reported (PMID: 8605324, 7557965, 10794430, 21184155, 22105576). [Load More]

[Reviewed by Xiao P. Peng on 2022-06-27 11:22:22]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
SCID-X1 X-linked severe combined immunodeficiency XLRdict. icon 300400www icon 1 (1 fams)
CIDX Combined immunodeficiency, X-linked XLRdict. icon Loss of Function 312863www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of IL2RG

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
203 ENST00000374202.7 1 CCDS14406 Select protein_coding 8 Yes 1480 NM_000206
207 ENST00000482750.6 protein_coding 7 No 446 XM_047442089

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
S308Wfs*58 EX7 961 c.923del p.Ser308TrpfsTer58 frameshift_variant Likely Pathogenic 1

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2008Somatic reversion18728247Authors studied a 5-yo boy with mild phenotype but persistent NK- and T-lymphopenia, who carried the L151P mutation in B, NK, and epithelial cells, but not in T cells. This suggested somatic reversion in a common T-cell precursor, which resulted in a diverse T-cell repertoire and significant immunity despite failure to produce antibodies.
2019Cryptic splicing30850927Reported 2 male cousins with late-onset CID due to a hypomorphic splice-altering synonymous change (p.S308=) located at the end of exon 7. Patients had diffuse cutaneous warts, recurrent molluscum contagiosum, and mild respiratory infections. The mutation lead to leaky mRNA and protein production; thus, T cells and NK cells were generated but with diminished/absent cytokine response respectively
2008Mosaicism18559672[somatic] Reported a 5-month-old Japanese boy hospitalized because of diarrhea, persistent cough, fever and failure to thrive, that developed Omenn syndrome like manifestations (e.g. generalized erythematous rash fever, hepatosplenomegaly, and lymphadenopathy). The patient carried a splice site mutation (IVS1+5G>A) and a revertant T-cell mosaicism consequence of a second mutation (IVS1+29G>A) predominantly in the skin.
1996Somatic reversion8900089back mutation
2000Mosaicism10618408
1995Mosaicism7860773
1997Mosaicism9049783
2013Somatic reversion23403317back mutation
2012Somatic reversion22460439multiple reversions
2015Somatic reversion26407811back mutation
2015Somatic reversion26076747back mutation
-Uniparental disomy-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.

References linked to variants in IL2RG

ID Year Title Journal PMID Variants
1245 2020 Atypical immune phenotype in severe combined immunodeficienc... Genes Immun. 32921793 1

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