Information on JAK1

Basic details

Alt. symbols: JAK1B | JAK1A | JTK3

Approved name: Janus kinase 1
Alt. names: tyrosineprotein kinase JAK1

Location: 1p31.3: 64833223 - 65067754 (-)
Gene type: protein_coding, 31 transcripts.

Scores: LoFtool: 0.168000 | pLI: 0.99590968 | LOEUF: 0.214

HGNC: 6190

NCBI: 3716, RefSeq: NG_023402.2

Ensembl: ENSG00000162434.14

LRG_1398 | Status: public

OMIM: 147795

Expression | ProteinAtlas

Normal function

JAK1 encodes a Janus kinase (JAK) non-receptor tyrosine kinase that mediates essential signaling events in both innate and adaptive immunity downstream of the type I and II interferon (IFN) receptors (PMID: 7615558, 16239216, 28111307, 32750333), as well as IL-2 and IL-10 receptors (PMID: 11909529, 12133952). After receptor-ligand binding, JAKs phosphorylate specific tyrosine residues on each receptor subunit’s cytoplasmic tail, creating docking sites for STAT recruitment and phosphorylation. The phosphorylated STATs then homo- or hetero-dimerize and translocate to the nucleus to activate gene transcription. For example, signaling through the IL-2 receptor complex leads to JAK1/3-dependent STAT5A/B recruitment and activation. While JAK1 can directly phosphorylate STAT proteins, it can activate STAT signaling through the transactivation of other receptor-associated JAK kinases (PMID: 16239216, 32750333).

Dysfunction and disease

Eletto et al. (2016) identified 2 homozygous variants (P733L and P832S) in a patient with recurrent atypical mycobacterial infections and early-onset metastatic bladder cancer (PMID: 28008925). Patient cells showed reduced JAK1 and STAT phosphorylation, as well as target gene expression, in response to cytokine stimulation, suggesting a LOF effect. Reconstitution experiments suggested that the P733L variant made the more significant phenotypic contribution. Del Bel et al. (2017) subsequently ide ntified a heterozygous GOF variant (A634D) in 3 members of a family with autoinflammation, immune dysregulation, and eosinophilia (AIIDE) [OMIM: 618999]. Immortalized patient B cells showed enhanced baseline and post-stimulation pSTAT1, while primary T cells showed increased pSTAT3 in response to IL-6 (PMID: 28111307). Ruxolitinib treatment attenuated the patients’ cellular features of hyperactive JAK/STAT signaling and their clinical symptoms. Gruber et al. (2020) identified another GOF variant (S703I) in a patient with autoinflammatory and atopic disease, eosinophilia, and refractory membranous nephropathy (PMID: 32750333). Interestingly, this mutation not only increased JAK1 activity, but it also transactivated partnering JAKs independently of the catalytic domain, enabling STAT-dependent signaling cascades not canonically mediated by JAK1. Takeichi et al. (2022) reported a heterozygous variant (H596D) in a patient with AIIDE-like features (failure-to-thrive, eosinophilia, atopic dermatitis, and hepatosplenomegaly), but also autism, significant hyperkeratosis, and early-onset hepatitis developing into cirrhosis but without significant GI or renal involvement. Knock-in mice showed upregulation of genes associated with JAK/STAT and NF-κB hyperactivation and a 22q11-like transcriptomic signature that may contribute to the autism phenotype. At ESID 2024, Marie Jeanpierre et al. reported characterization of 5 novel monoallelic JAK1 variants (see AIIDE entry for further details) [Load More]

[Reviewed by Xiao P. Peng on 2024-11-09 17:04:30]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
AIIDE Autoinflammation, immune dysregulation, and eosinophilia ADdict. icon Gain of Function 618999www icon 30 (13 fams)
JAK1D JAK1 deficiency ARdict. icon Loss of Function - 1 (1 fams)

Transcripts of JAK1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
210 ENST00000672179.2 CCDS41346 protein_coding 25 No 4830 NM_001321856
211 ENST00000672247.2 CCDS41346 protein_coding 26 No 5061 NM_001321855
214 ENST00000672751.2 protein_coding 25 No 1263 NM_001321852
201 ENST00000342505.5 1 CCDS41346 Select protein_coding 25 Yes 5092 NM_002227
212 ENST00000672434.2 CCDS41346 protein_coding 27 No 5247 NM_001321853
222 ENST00000699259.1 protein_coding 26 No XM_047419677
223 ENST00000699260.1 protein_coding 25 No NM_001321857
225 ENST00000699262.1 CCDS41346 protein_coding 26 No NM_001320923
229 ENST00000699312.1 CCDS41346 protein_coding 26 No NM_001321854

Published variants

Found 27 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
Y1077C EX23 3524 c.3230A>G p.Tyr1077Cys missense_variant Uncertain significance 0
V985I EX21 3247 c.2953G>A p.Val985Ile missense_variant Likely Pathogenic 2
K908A EX20 3016-3017 c.2722_2723delinsGC p.Lys908Ala missense_variant Pathogenic 0
C892Y EX20 2969 c.2675G>A p.Cys892Tyr missense_variant Uncertain significance 0
R873C EX19 2911 c.2617C>T p.Arg873Cys missense_variant Uncertain significance 0
N833S EX18 2792 c.2498A>G p.Asn833Ser missense_variant Uncertain significance 0
P832S EX18 2788 c.2494C>T p.Pro832Ser missense_variant Pathogenic 1
F805Y EX18 2708 c.2414T>A p.Phe805Tyr missense_variant Likely Pathogenic 1
C787F EX17 2654 c.2360G>T p.Cys787Phe missense_variant Pathogenic 21
P733L EX16 2492 c.2198C>T p.Pro733Leu missense_variant Pathogenic 1
Y704C EX15 2405 c.2111A>G p.Tyr704Cys missense_variant Uncertain significance 0
S703I EX15 2402 c.2108G>T p.Ser703Ile missense_variant Pathogenic 1
S700N EX15 2393 c.2099G>A p.Ser700Asn missense_variant Likely Pathogenic 1
F669V EX15 2299 c.2005T>G p.Phe669Val missense_variant Uncertain significance 0
V651M EX14 2245 c.1951G>A p.Val651Met missense_variant Uncertain significance 0
A634D EX14 2195 c.1901C>A p.Ala634Asp missense_variant Pathogenic 4
D630G EX13 2183 c.1889A>G p.Asp630Gly missense_variant Uncertain significance 0
H596D EX13 2080 c.1786C>G p.His596Asp missense_variant Pathogenic 1
R506C EX11 1810 c.1516C>T p.Arg506Cys missense_variant Likely Pathogenic 5
T480I EX10 1733 c.1439C>T p.Thr480Ile missense_variant Uncertain significance 0
R360W EX8 1372 c.1078C>T p.Arg360Trp missense_variant Uncertain significance 0
S260T EX7 1073 c.779G>C p.Ser260Thr missense_variant Uncertain significance 0
25Kb-(EX2_5)-TRIP EX2-5 295-446 c.1_151trip p.? protein_altering_variant Likely Pathogenic 1
E139K EX5 709 c.415G>A p.Glu139Lys missense_variant Likely Pathogenic 5
W127R EX5 673 c.379T>A p.Trp127Arg missense_variant Uncertain significance 0
D99G EX4 590 c.296A>G p.Asp99Gly missense_variant Uncertain significance 0
T96I EX4 581 c.287C>T p.Thr96Ile missense_variant Uncertain significance 0

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2020Mosaicism32750333[somatic] Study indetifies a patient with early-onset multi-organ immune dysregulation carrying a mosaic, GOF mutation (p.S703I). The mutation was detected in 27% of seq. reads. Sequencing of different tissues showed that variant was found at different percentages in each tissue and ranged between 15% and 65% of cells.
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in JAK1

ID Year Title Journal PMID Variants
689 2022 Autoinflammatory Keratinization Disease With Hepatitis and A... Front. Immunol. 35046931 1
690 2020 Complex Autoinflammatory Syndrome Unveils Fundamental Princi... Immunity 32750333 2
691 2016 Biallelic JAK1 mutations in immunodeficient patient with myc... Nat. Commun. 28008925 2
692 2017 JAK1 gain-of-function causes an autosomal dominant immune dy... JACI 28111307 1
783 2022 Human JAK1 gain of function causes dysregulated myelopoeisis... JCI insight 36546480 1
853 2023 Successful treatment of JAK1 associated inflammatory disease... JACI 37343845 1
869 2022 Molecular diagnosis of childhood immune dysregulation, polye... JACI 33864888 3
1213 2024 Individuals with JAK1 variants are affected by syndromic fea... JEM 38563820 20

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