Information on JAK3

Basic details

Alt. symbols: L-JAK | JAKL | LJAK | JAK3_HUMAN | JAK-3

Approved name: Janus kinase 3
Alt. names: tyrosine-protein kinase JAK3, leukocyte Janus kinase

Location: 19p13.11: 17824780 - 17848071 (-)
Gene type: protein_coding, 11 transcripts.

Scores: LoFtool: 0.159000 | pLI: 0.99586380 | LOEUF: 0.525

HGNC: 6193

NCBI: 3718, RefSeq: NG_007273.1

Ensembl: ENSG00000105639.21

LRG_77 | Status: public

OMIM: 600173

Expression | ProteinAtlas

Normal function

JAK3 encodes a Janus kinase (JAK) non-receptor tyrosine kinase that mediates essential signaling events in both innate and adaptive immunity downstream of cytokine receptors that share the common gamma subunit such as IL2R, IL4R, IL7R, IL9R, IL15R and IL21R. After receptor-ligand binding, JAKs phosphorylate specific tyrosine residues on each receptor subunit’s cytoplasmic tail, creating docking sites for STAT recruitment and phosphorylation. The phosphorylated STATs then homo- or hetero-dimerize and translocate to the nucleus to activate gene transcription. For example, signaling through the IL-2 receptor complex leads to JAK1/3-dependent STAT5A/B recruitment and activation.

Dysfunction and disease

Biallelic null mutations in JAK3 are classically associated with autosomal recessive T-B+NK- severe combined immunodeficiency (SCID) [OMIM: 600802], with a clinical phenotype nearly identical to that of X-linked SCID due to common gamma chain mutations. Clinically, patients present with opportunistic life-threatening infections, intractable diarrhea, dermatitis, and failure to thrive in the first months of life. The lack of T cells is attributed to lack of IL-7 signaling, while the NK cell defic its are attributed to lack of IL-15 signaling and B cells are nonfunctional due to both the absence of helper T cells and the lack of IL-4 and IL-21 signaling leading to impaired class switch recombination. The majority have mutations within the catalytically inactive JH2 pseudokinase domain (Exons 11-17), leading to absent protein expression. However, hypomorphic mutations in JAK3 have been linked to other forms of immunodeficiency, from life-threatening Omenn’s syndrome to milder combined immunodeficiency or primary antibody deficiency (PMID: 22520845, 23384681, 26182690, 26545580). Even significant intrafamilial variability has been reported in the spectrum and severity of the immune phenotypes, and immune dysregulatory complications, including lymphoproliferation and autoimmunity, are also increasingly noted (PMID: 11781709). A number of patients harboring biallelic hypomorphic JAK3 mutations (largely missense, though also a significant minority of splice site changes and a few other likely truncating mutations) have been diagnosed with CVID or related antibody deficiencies (PMID:11781709, 26182690, 27577878, 31942606, 32615565, 35232000). Activating mutations (A572V, A573V or V722I) in JAK3 have also been found in NK/T-cell lymphomas (PMID: 22705984, 23689514) [Load More]

[Reviewed by Xiao P. Peng on 2022-08-30 21:28:10]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
SCID1 T-negative/B-positive SCID type 1 ARdict. icon Loss of Function 600802www icon 14 (13 fams)
CLPD-NK2 Chronic lymphoproliferative disorder of NK-cells 2 ADdict. icon Gain of Function - 0 (0 fams)
CVID24 CID/CVID-like JAK3 deficiency ADdict. icon Loss of Function - 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of JAK3

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000458235.7 1 CCDS12366 Select protein_coding 24 Yes 5386 NM_000215
203 ENST00000527031.5 retained_intron No XM_011527991

Published variants

Found 13 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
151-bp-DEL EX17 2250-2400 c.2200_2350del p.(Lys734ThrfsTer61)? inframe_deletion Pathogenic 2
D784N EX17 2400 c.2350G>A p.Asp784Asn missense_variant Pathogenic 4
R775H EX17 2374 c.2324G>A p.Arg775His missense_variant Likely Pathogenic 2
H645R EX15 1984 c.1934A>G p.His645Arg missense_variant Likely Pathogenic 1
Y633* EX14 1949 c.1899C>A p.Tyr633Ter stop_gained Likely Pathogenic 1
R582W EX13 1794 c.1744C>T p.Arg582Trp missense_variant Pathogenic 1
C565* EX12 1745 c.1695C>A p.Cys565Ter stop_gained Pathogenic 1
S394Lfs*16 EX9 1228-1229 c.1178dup p.Ser394LeufsTer16 frameshift_variant Pathogenic 1
R117C EX4 399 c.349C>T p.Arg117Cys missense_variant Likely Pathogenic 2
G111R EX4 381 c.331G>A p.Gly111Arg missense_variant Pathogenic 1
R101G EX3 351 c.301A>G p.Arg101Gly missense_variant Pathogenic 1
Y100C EX3 349 c.299A>G p.Tyr100Cys missense_variant Pathogenic 1
A58T EX2 222 c.172G>A p.Ala58Thr missense_variant Likely Pathogenic 3

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2017Cryptic splicing27956217
2014Somatic reversion25205547back mutation
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.

References linked to variants in JAK3

ID Year Title Journal PMID Variants
706 2020 Mutational landscape of severe combined immunodeficiency pat... Int. J. Immunogen 32445296 1
972 1995 Mutations of Jak-3 gene in patients with autosomal severe co... Nature 7659163 2
1226 2019 Graft versus host disease and microchimerism in a JAK3 defic... Allergy Asthma Clin. Immunol. 31440277 1
1233 1998 Molecular and biochemical characterization of JAK3 deficienc... Br. J. Haematol. 9753072 1
1237 2022 Case Report: Mutations in JAK3 causing severe combined immun... Front. Immunol. 36466884 2
1243 2018 A Novel Homozygous JAK3 Mutation Leading to T-B+NK- SCID in ... Front.. Pediatr. 30177960 1
1245 2020 Atypical immune phenotype in severe combined immunodeficienc... Genes Immun. 32921793 1
1249 2020 A case of aberrant CD8 T cell-restricted IL-7 signaling with... Immunol. Res. 32215810 1
1259 2019 Disseminated Bacille Calmette-Guérin infection in a patient ... Pediatric Dermatol. 31309596 2
1264 1995 Mutation of Jak3 in a patient with SCID: essential role of J... Science 7481768 2

Phenotypic & functional assays available?

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