Information on LACC1

Basic details

Alt. symbols: C13orf31 | FLJ38725 | FAMIN

Approved name: laccase domain containing 1
Alt. names: chromosome 13 open reading frame 31, laccase (multicopper oxidoreductase) domain containing 1 | fatty acid metabolism–immunity nexus

Location: 13q14.11: 43879284 - 43893932 (+)
Gene type: protein_coding, 3 transcripts.

Scores: LoFtool: | pLI: 0.00000464 | LOEUF: 1.076

HGNC: 26789

NCBI: 144811, RefSeq: NG_053160.1

Ensembl: ENSG00000179630.11

LRG_ | Status: none

OMIM: 613409

Expression | ProteinAtlas

Normal function

LACC1 encodes FAMIN, a purine nucleoside enzyme that modulates purine nucleotide metabolism to regulate the metabolic function and bioenergetic state of macrophages (PMID: 31978345). It catalyzes the phosphorolysis of adenosine, guanosine and inosine nucleosides into D-ribose 1-phosphate and the respective free bases, adenine, guanine and hypoxanthine. It also catalyzes the phosphorolysis of S-methyl-5'-thioadenosine into adenine and S-methyl-5-thio-alpha-D-ribose 1-phosphate and has adenosine deaminase activity. It drives a purine nucleotide cycle that consumes aspartate and releases fumarate in a manner dependent upon fatty acid oxidation and ATP-citrate lyase activity, preventing cytoplasmic acidification and balancing the cytoplasmic-mitochondrial redox interface. It also participates in pattern recognition receptor (PRR)-induced macrophage activation, associating with the NOD2 signaling complex to promote optimal NOD2-induced signaling, cytokine secretion and bacterial clearance (PMID: 28593945, 31875558). Upon PRR stimulation of macrophages, it localizes to the endoplasmic reticulum (ER) and associates with sensors of ER stress to promote the unfolded protein response (UPR).

Dysfunction and disease

Biallelic mutations in LACC1, encoding the laccase domain-containing 1 (LACC1) oxidoreductase or FAMIN, are associated with a monogenic form of poly- or oligo-articular juvenile arthritis [OMIM: 618795] characterized by early childhood onset of symmetric arthritis in multiple large and/or small joints, often along with systemic symptoms such as quotidian fever, erythematous rash or recurrent painful erysipelas-like plaques, serositis, tenosynovitis, generalized lymphadenopathy, and hepato- and/o r spleno-megaly (PMID: 25220867, 27881174, 29717096, 30872671). Labs show markedly increased inflammatory markers and patients may also have leukocytosis, thrombocytosis, and autoantibodies such as ANA (antinuclear antibody) but usually undetectable or weak RF (rheumatoid factor) and no ENA (extractable nuclear antigen) positivity. Of note, FAMIN associates with fatty acid synthase on peroxisomes to promote fatty-acid oxidation, and the NOD2-signaling complex to induce mitochondrial production of reactive oxygen species, cytokine secretion and bacterial clearance by macrophages (PMID: 28593945, 31875558). [Load More]

[Reviewed by Xiao P. Peng on 2022-06-22 06:28:09]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
JUVAR Juvenile arthritis ARdict. icon Loss of Function 618795www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of LACC1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000325686.7 CCDS9391 Select protein_coding 7 Yes 4028 NM_001350638,NM_001350639,NM_001350641,NM_001350642,NM_001350643,NM_001350645,NM_001350646,NM_001350647,NM_001350648,NM_153218
203 ENST00000441843.5 CCDS9391 protein_coding 7 No 4262 NM_001128303,NM_001350640,NM_001350644

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in LACC1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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