Information on ARHGEF1
Basic details
Alt. symbols: P115-RHOGEF | SUB1.5 | LBCL2
Approved name: Rho guanine nucleotide exchange factor 1
Alt. names: Rho guanine nucleotide exchange factor (GEF) 1
Location: 19q13.2: 41883173 - 41930150 (+)
Gene type: protein_coding, 27 transcripts.
Scores: LoFtool: 0.217000 | pLI: 0.90949746 | LOEUF: 0.342
Normal function
ARHGEF1 encodes a protein predominantly expressed in hematopoietic cells and specific for regulation of the GTPase RhoA, which plays a role in cytoskeletal signaling and PI3K/AKT pathway control. ARHGEF1 is involved in the signaling of GPCRs associated with G-alpha 12/13-containing heterotrimeric G proteins AKA guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13) subunits (PMID: 9641915, 9641916). It acts as a GTPase-activating protein (GAP) for GNA12 and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase (PMID: 30521495, 8810315, 9641915, 9641916), an activity inhibited by binding to activated GNA12 (PMID: 9641916). It has been reported to mediate angiotensin-2-induced RhoA activation (PMID: 20098430).
Dysfunction and disease
Bouafia et al. (2019) reported compound heterozygous ARHGEF1 mutations (c.898 C>T; p.R300*/c.1669-1G>T) in 2 siblings with low IgG levels and impaired vaccine responses, as well as clinical features of recurrent viral and severe sinopulmonary infections and bronchiectasis (PMID: 30521495). One of the sisters also showed low IgM levels, autoimmune cytopenia, and low isohemagglutinin titers. Both had low absolute B cell counts, as well as reduced MZ, memory and switched memory B cell proportions w ith relatively increased transitional B cells, T cell subset abnormalities and circulating immature myeloid cells (a feature not observed in ARHGEF1 LOF mouse models). Patient T and B cells showed low RhoA activity and low cortical F-actin polymerization, leading to impaired regulation of AKT/mTOR signaling and impaired lymphocyte migration with consequently disrupted B cell distribution within GCs. [Load More]
[Reviewed by Xiao P. Peng on 2024-07-29 00:59:43]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of ARHGEF1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
203 | ENST00000354532.8 | CCDS12591 | Select | protein_coding | 29 | Yes | 3229 | NM_001396006,NM_004706 | |
204 | ENST00000378152.8 | protein_coding | 27 | No | 2986 | NM_001396004 | |||
201 | ENST00000337665.8 | CCDS12590 | protein_coding | 29 | No | 3171 | NM_199002 | ||
202 | ENST00000347545.8 | CCDS12592 | protein_coding | 28 | No | 3091 | NM_198977 | ||
219 | ENST00000599846.6 | protein_coding | 30 | No | 3393 | NM_001396000 | |||
227 | ENST00000706938.1 | protein_coding | No | XM_047439663 | |||||
224 | ENST00000698932.1 | protein_coding | No | NM_001396002,NM_001396003 |
Published variants
Found 2 variants
Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |