Information on LIG4

Basic details

Alt. symbols: LIG4S

Approved name: DNA ligase 4
Alt. names: ligase IV, DNA, ATP-dependent | polydeoxyribonucleotide synthase [ATP] 4, polynucleotide ligase, sealase, DNA repair enzyme, DNA joinase

Location: 13q33.3: 108207439 - 108218368 (-)
Gene type: protein_coding, 19 transcripts.

Scores: LoFtool: 0.531000 | pLI: 0.00210124 | LOEUF: 0.802

HGNC: 6601

NCBI: 3981, RefSeq: NG_007396.1

Ensembl: ENSG00000174405.15

LRG_79 | Status: public

OMIM: 601837

Expression | ProteinAtlas

Normal function

The LIG4 gene encode the protein DNA ligase IV. DNA ligases are enzymes that play a crucial role in DNA repair processes, specifically in the joining or "ligation" of DNA strands. DNA ligase IV is involved in a specific type of DNA repair known as non-homologous end joining (NHEJ). NHEJ is a mechanism that repairs DNA double-strand breaks (DSBs), which are severe types of DNA damage that can occur due to various factors such as radiation, chemicals, or errors during DNA replication. DNA ligase IV acts as a key component of the NHEJ pathway by catalyzing the final step of DSB repair, which is the ligation of the broken DNA ends. More specifically, it catalyzes the formation of a phosphodiester bond between the DNA ends, effectively sealing the break and restoring the integrity of the DNA molecule. This process is essential for maintaining genomic stability and preventing the accumulation of mutations that can lead to genetic disorders or cancer. At the cellular level, DNA ligase IV is primarily expressed in dividing cells, where DNA replication and repair activities are more active. It is particularly important during embryonic development and in rapidly proliferating tissues such as the bone marrow, where it is involved in the generation and maintenance of immune cells.

Dysfunction and disease

Biallelic loss-of-function (both truncating and missense) mutations in LIG4 were first reported to cause disease in 2001 by O'Driscoll et al. The condition was termed LIG4 syndrome, and patients present with a combination of immunodeficiency, unusual facial features, microcephaly and developmental and growth delay. As in the Nijmegen breakage syndrome, patient cells showed pronounced radiosensitivity due to impaired DNA double-strand break rejoining; however, they showed normal cell cycle checkp oint responses. More recently (in 2023), 2 specific monoallelic loss-of-function variants (p.R580Q, p.A842D) were reported to cause a new condition characterized by autoimmunity and immunodeficiency in 4 patients from 3 unrelated families (PMID: 37004747). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2023-08-25 11:16:28]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
SCID14 LIG4 syndrome ARdict. icon Loss of Function 606593www icon 0 (0 fams)
IDSRS Immune dysregulation, skeletal anomalies and radiosensitivity syndrome ADdict. icon Haploinsufficiency - 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of LIG4

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000405925.2 CCDS9508 protein_coding 2 No 4065 NM_001098268
204 ENST00000614526.2 CCDS81779 protein_coding 3 No 3884 NM_001330595
203 ENST00000611712.4 CCDS9508 protein_coding 3 No 4180 NM_001379095,NM_002312
202 ENST00000442234.6 CCDS9508 Select protein_coding 3 Yes 3981 NM_001352603,NM_206937
210 ENST00000687164.1 protein_coding No NM_001352602
212 ENST00000688396.1 protein_coding No NM_001352599
213 ENST00000688455.1 protein_coding No NM_001352600
214 ENST00000688529.1 protein_coding No NM_001352601,NM_001352604
215 ENST00000688595.1 protein_coding No NM_001352598

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2016Somatic reversion26762768intragenic recombination
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.

References linked to variants in LIG4

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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