Information on LPIN2

Basic details

Alt. symbols: KIAA0249

Approved name: lipin 2
Alt. names: phosphatidate phosphatase LPIN2

Location: 18p11.31: 2885296 - 3013144 (-)
Gene type: protein_coding, 9 transcripts.

Scores: LoFtool: 0.319000 | pLI: 0.67351297 | LOEUF: 0.510

HGNC: 14450

NCBI: 9663, RefSeq: NG_007507.1

Ensembl: ENSG00000101577.11

LRG_174 | Status: public

OMIM: 605519

Expression | ProteinAtlas

Normal function

Lipin-2 is a magnesium-dependent phosphatidate phosphatase that catalyzes the conversion of phosphatidic acid to DAG during triglyceride, phosphatidylcholine and phosphatidylethanolamine biosynthesis in the ER. It has been reported to control proinflammatory signaling induced by saturated fatty acids in macrophages (PMID: 22334674). Lipin-2 also restricts overphosphorylation of MAPK kinases such as ERK, p38, and JNK to act as a negative regulator of the NLRP3 inflammasome (PMID: 28031477). In addition to their function as lipid metabolizing enzymes, lipins contain nuclear localization signals and can act as transcriptional cofactors that modulate the activity of key transcription factors such as PPARalpha, PPARgamma, or sterol regulatory element-binding protein 1 (SREBP1) (PMID: 24133206).

Dysfunction and disease

Biallelic nonsense, missense, frameshift, splice site and large intragenic deletion mutations in LPIN2, encoding lipin-2, are associated with Majeed syndrome [OMIM: 609628], an AR disorder with three cardinal features: Chronic recurrent multifocal osteomyelitis (CRMO), congenital dyserythropoietic anemia (CDA), and skin inflammation. The CRMO begins in infancy and continues relentlessly leading to retarded growth or joint contractures or both, while CDA is variable in severity and characterised by microcytosis. Neutrophilic dermatosis or cutaneous pustulosis are the most common reported inflammatory skin phenotype and patients may also have recurrent fevers. Labs are notable for elevations in ESR and CRP and patients respond to IL-1 inhibition (PMID: 15994876). Lipin-2 depletion reduces cellular cholesterol levels, which increases ion currents through the ATP‐activated P2X7 receptor and subsequent NLRP3 inflammasome activation with mature IL‐1beta release. However, the CRMO phenotype associated with both LPIN2 and IL1RN apparently arises via an NLRP3 inflammasome-independent pathway whereby LPS‐stimulated M2‐MDMs from patients promote accelerated osteoclastogenesis through changes in macrophage phosphorylation patterns that could largely be reversed by IL‐1 inhibition (PMID: 33314777). [Load More]

[Reviewed by Xiao P. Peng on 2022-06-22 06:39:06]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
MJDS Majeed syndrome ARdict. icon 609628www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of LPIN2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000261596.9 1 CCDS11829 protein_coding 20 No 6229 NM_014646
204 ENST00000677752.1 CCDS11829 Select protein_coding 20 Yes 6052 NM_001375808
206 ENST00000697040.1 protein_coding No NM_001375809

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in LPIN2

ID Year Title Journal PMID Variants

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