Information on LRRC8A
Alt. symbols: LRRC8 | KIAA1437 | FLJ10337 | SWELL1
Approved name: leucine rich repeat containing 8 VRAC subunit A
Alt. names: leucine rich repeat containing 8, leucine rich repeat containing 8 family member A
Location: 9q34.11: 128882133 - 128918039 (+)
Gene type: protein_coding, 5 transcripts.
Scores: LoFtool: 0.065600 | pLI: 0.91610468 | LOEUF: 0.347
Gene Ontology (GO)
- Molecular function:
- Cell component:
- Biological process:
Normal function
LRRC8A is a ubiquitously expressed gene that encodes a leucine-rich repeat (LRR)-containing protein, which is detected at higher levels on the surface of thymocytes than on other immune cells. It is an essential component of the volume-regulated anion channel (VRAC, also named VSOAC channel), an anion channel required to maintain a constant cell volume in response to extracellular or intracellular osmotic changes. LRRC8A is involved in B-cell development: required for the pro-B cell to pre-B cell transition. It may also play a role in lysosome homeostasis.
Dysfunction and disease
To date only one mutation in this gene has been reported. The patient exhibited congenital agammaglobulinemia, lack of B cells and minor facial anomalies (Sawada et al. 2003). The authors detected a genomic translocation between chromosomes 9 and 20 that resulted in truncation of the LRRC8A gene. This new form of autosomal dominant agammaglobulinemia is known as Agammaglobulinemia type 5 [MIM:613506]. In addition, the knockout Lrrc8a mouse model shows abnormal T-cell development and function, an d a modest block in B cell development but intact intrinsic B cell function. Lrrc8a(-/-) mice also had increased prenatal and postnatal mortality, growth retardation, and multiple tissue abnormalities. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2020-05-20]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of LRRC8A
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000259324.5 | CCDS35155 | protein_coding | 4 | No | 4619 | NM_001127244 | ||
203 | ENST00000372600.9 | 1 | CCDS35155 | Select | protein_coding | 4 | Yes | 4334 | NM_019594 |
202 | ENST00000372599.7 | CCDS35155 | protein_coding | 3 | No | 4161 | NM_001127245 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in LRRC8A
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.
ID | Year | Title | Journal | PMID | Variants |
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