Information on LRRC8A
Basic details
Alt. symbols: LRRC8 | KIAA1437 | FLJ10337 | SWELL1
Approved name: leucine rich repeat containing 8 VRAC subunit A
Alt. names: leucine rich repeat containing 8, leucine rich repeat containing 8 family member A
Location: 9q34.11: 128882133 - 128918039 (+)
Gene type: protein_coding, 5 transcripts.
Scores: LoFtool: 0.065600 | pLI: 0.91610468 | LOEUF: 0.347
Normal function
LRRC8A is a ubiquitously expressed gene that encodes a leucine-rich repeat (LRR)-containing protein, which is detected at higher levels on the surface of thymocytes than on other immune cells. It is an essential component of the volume-regulated anion channel (VRAC, also named VSOAC channel), an anion channel required to maintain a constant cell volume in response to extracellular or intracellular osmotic changes. LRRC8A is involved in B-cell development: required for the pro-B cell to pre-B cell transition. It may also play a role in lysosome homeostasis.
Dysfunction and disease
To date only one mutation in this gene has been reported. The patient exhibited congenital agammaglobulinemia, lack of B cells and minor facial anomalies (Sawada et al. 2003). The authors detected a genomic translocation between chromosomes 9 and 20 that resulted in truncation of the LRRC8A gene. This new form of autosomal dominant agammaglobulinemia is known as Agammaglobulinemia type 5 [MIM:613506]. In addition, the knockout Lrrc8a mouse model shows abnormal T-cell development and function, an d a modest block in B cell development but intact intrinsic B cell function. Lrrc8a(-/-) mice also had increased prenatal and postnatal mortality, growth retardation, and multiple tissue abnormalities. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2020-05-20 15:00:57]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of LRRC8A
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000259324.5 | CCDS35155 | protein_coding | 4 | No | 4619 | NM_001127244 | ||
203 | ENST00000372600.9 | 1 | CCDS35155 | Select | protein_coding | 4 | Yes | 4334 | NM_019594 |
202 | ENST00000372599.7 | CCDS35155 | protein_coding | 3 | No | 4161 | NM_001127245 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in LRRC8A
ID | Year | Title | Journal | PMID | Variants |
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