Information on LRRC8A

Basic details

Alt. symbols: LRRC8 | KIAA1437 | FLJ10337 | SWELL1

Approved name: leucine rich repeat containing 8 VRAC subunit A
Alt. names: leucine rich repeat containing 8, leucine rich repeat containing 8 family member A

Location: 9q34.11: 128882133 - 128918039 (+)
Gene type: protein_coding, 5 transcripts.

Scores: LoFtool: 0.065600 | pLI: 0.91610468 | LOEUF: 0.347

HGNC: 19027

NCBI: 56262, RefSeq: NG_009630.1

Ensembl: ENSG00000136802.12

LRG_80 | Status: public

OMIM: 608360

Expression | ProteinAtlas

Normal function

LRRC8A is a ubiquitously expressed gene that encodes a leucine-rich repeat (LRR)-containing protein, which is detected at higher levels on the surface of thymocytes than on other immune cells. It is an essential component of the volume-regulated anion channel (VRAC, also named VSOAC channel), an anion channel required to maintain a constant cell volume in response to extracellular or intracellular osmotic changes. LRRC8A is involved in B-cell development: required for the pro-B cell to pre-B cell transition. It may also play a role in lysosome homeostasis.

Dysfunction and disease

To date only one mutation in this gene has been reported. The patient exhibited congenital agammaglobulinemia, lack of B cells and minor facial anomalies (Sawada et al. 2003). The authors detected a genomic translocation between chromosomes 9 and 20 that resulted in truncation of the LRRC8A gene. This new form of autosomal dominant agammaglobulinemia is known as Agammaglobulinemia type 5 [MIM:613506]. In addition, the knockout Lrrc8a mouse model shows abnormal T-cell development and function, an d a modest block in B cell development but intact intrinsic B cell function. Lrrc8a(-/-) mice also had increased prenatal and postnatal mortality, growth retardation, and multiple tissue abnormalities. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-05-20 15:00:57]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
AGM5 Agammaglobulinemia 5 ADdict. icon 613506www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of LRRC8A

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000259324.5 CCDS35155 protein_coding 4 No 4619 NM_001127244
203 ENST00000372600.9 1 CCDS35155 Select protein_coding 4 Yes 4334 NM_019594
202 ENST00000372599.7 CCDS35155 protein_coding 3 No 4161 NM_001127245

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in LRRC8A

ID Year Title Journal PMID Variants

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