Information on MAGT1
Alt. symbols: DKFZp564K142 | IAP | OST3B | MRX95 | SLC58A1
Approved name: magnesium transporter 1
Alt. names: oligosaccharyltransferase 3 homolog B (S. cerevisiae)
Location: Xq21.1: 77825747 - 77899271 (-)
Gene type: protein_coding, 13 transcripts.
Scores: LoFtool: 0.338000 | pLI: 0.88737388 | LOEUF: 0.326
Gene Ontology (GO)
- Molecular function:
- Cell component: oligosaccharyltransferase complex [GO:0008250]
- Biological process: protein N-linked glycosylation via asparagine [GO:0018279]
Normal function
MAGT1 encodes a highly selective Mg(2+) transporter and acts as an accessory protein for STT3B, 1 of the catalytic subunits of the oligosaccharyltransferase (OST) complex, which transfers nascent glycan chains onto ER proteins during N-glycosylation.
Dysfunction and disease
X-linked mutations in MAGT1 are associated with Congenital disorder of glycosylation (CDG), type Icc [OMIM: 301031}, as well as with a syndromic X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection and neoplasia (XMEN) [OMIM:300853] which can share biochemical features of the former. XMEN is characterized by CD4 lymphopenia, severe chronic viral infections (especially EBV), and defective T-cell activation (PMID: 21796205). This is thought to be due to an abrogated T-cell specific transient Mg(2+) influx upon antigen receptor engagement, leading to impaired signal transduction such as defective phospholipase Cγ1 activation and Ca(2+) influx. Some patients may have elevated B cell counts, as well as variable or intermittent deficiencies in Ig levels and vaccine responses. Thus, in those with milder T-cell phenotypes, XMEN may potentially be diagnosed as CVID and MAGT1 mutations were indeed identified in a cohort of CVID patients by WES (PMID: 31942606). Additionally, Au et al. (2022) recently reported the identification of a novel MAGT1 mutation (c.916del) in a patient diagnosed with CVID on the basis of recurrent infections, hypogammaglobulinemia, and ITP (PMID: 35198253). He showed reduced switched memory B cells and plasmablasts despite an elevated total B cell count, as well as decreased expression of NKG2D in his NK cells and CD8+ T cells upon further investigation. [Load More]
[Reviewed by Xiao P. Peng on 2022-07-09]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not been completed. It is currently ongoing.
Transcripts of MAGT1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000358075.11 | protein_coding | 10 | No | 4047 | NM_032121 | |||
204 | ENST00000610432.4 | 1 | CCDS14436 | protein_coding | 10 | No | 4019 | NM_032121 | |
205 | ENST00000618282.5 | Select | protein_coding | 10 | Yes | 4506 | NM_001367916 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not been completed. It is currently ongoing.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Skewed X-linked inactivation | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in MAGT1
Please mind that curation (inclusion of all relevant literature) has not been completed. It is currently ongoing.
ID | Year | Title | Journal | PMID | Variants |
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