Information on MAGT1

Alt. symbols: DKFZp564K142 | IAP | OST3B | MRX95 | SLC58A1

Approved name: magnesium transporter 1
Alt. names: oligosaccharyltransferase 3 homolog B (S. cerevisiae)

Location: Xq21.1: 77825747 - 77899271 (-)
Gene type: protein_coding, 13 transcripts.

Scores: LoFtool: 0.338000 | pLI: 0.88737388 | LOEUF: 0.326

HGNC: 28880

NCBI: 84061, RefSeq: NG_016390.1

Ensembl: ENSG00000102158.22

LRG_353 | Status: public

OMIM: 300715

Expression | ProteinAtlas

Gene Ontology (GO)
  • Molecular function:
  • Cell component: oligosaccharyltransferase complex [GO:0008250]
  • Biological process: protein N-linked glycosylation via asparagine [GO:0018279]
Normal function

MAGT1 encodes a highly selective Mg(2+) transporter and acts as an accessory protein for STT3B, 1 of the catalytic subunits of the oligosaccharyltransferase (OST) complex, which transfers nascent glycan chains onto ER proteins during N-glycosylation.

Dysfunction and disease

X-linked mutations in MAGT1 are associated with Congenital disorder of glycosylation (CDG), type Icc [OMIM: 301031}, as well as with a syndromic X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection and neoplasia (XMEN) [OMIM:300853] which can share biochemical features of the former. XMEN is characterized by CD4 lymphopenia, severe chronic viral infections (especially EBV), and defective T-cell activation (PMID: 21796205). This is thought to be due to an abrogated T-cell specific transient Mg(2+) influx upon antigen receptor engagement, leading to impaired signal transduction such as defective phospholipase Cγ1 activation and Ca(2+) influx. Some patients may have elevated B cell counts, as well as variable or intermittent deficiencies in Ig levels and vaccine responses. Thus, in those with milder T-cell phenotypes, XMEN may potentially be diagnosed as CVID and MAGT1 mutations were indeed identified in a cohort of CVID patients by WES (PMID: 31942606). Additionally, Au et al. (2022) recently reported the identification of a novel MAGT1 mutation (c.916del) in a patient diagnosed with CVID on the basis of recurrent infections, hypogammaglobulinemia, and ITP (PMID: 35198253). He showed reduced switched memory B cells and plasmablasts despite an elevated total B cell count, as well as decreased expression of NKG2D in his NK cells and CD8+ T cells upon further investigation. [Load More]

[Reviewed by Xiao P. Peng on 2022-07-09]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CDG1CC Congenital disorder of glycosylation, type Icc XLRdict. icon 301031www icon 0 (0 fams)
XMEN Immunodeficiency, X-linked, with magnesium defect, EBV infection and neoplasia XLRdict. icon 300853www icon 1 (1 fams)

Please mind that curation (inclusion of all reported patients) of this gene has not been completed. It is currently ongoing.

Transcripts of MAGT1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000358075.11 protein_coding 10 No 4047 NM_032121
204 ENST00000610432.4 1 CCDS14436 protein_coding 10 No 4019 NM_032121
205 ENST00000618282.5 Select protein_coding 10 Yes 4506 NM_001367916

Published variants

Found 0 variants

Var.name ⓘ Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that curation (inclusion of all reported gene variants) has not been completed. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in MAGT1

Please mind that curation (inclusion of all relevant literature) has not been completed. It is currently ongoing.

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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