Information on ATP6AP1

Basic details

Alt. symbols: ATP6S1 | ATP6IP1 | ORF | XAP-3 | VATPS1 | 16A | Ac45 | XAP3 | CF2

Approved name: ATPase H+ transporting accessory protein 1
Alt. names: ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1, ATPase, H+ transporting, lysosomal accessory protein 1

Location: Xq28: 154428633 - 154436516 (+)
Gene type: protein_coding, 14 transcripts.

Scores: LoFtool: 0.034200 | pLI: 0.82763366 | LOEUF: 0.213

HGNC: 868

NCBI: 537, RefSeq: NG_052807.1

Ensembl: ENSG00000071553.18

LRG_ | Status: none

OMIM: 300197

Expression | ProteinAtlas

Normal function

The gene encodes the accessory subunit of the V-type proton ATPase, a multisubunit protein complex that is required for acidification of intracellular organelles and that is also involved in membrane trafficking and calcium-dependent membrane fusion. V-type ATPase dependent organelle acidification is required for intracellular processes like protein sorting, zymogen activation and receptor-mediated endocytosis. The accessory subunit ATP6AP1 assists in the V-type ATPase-mediated acidification of neuroendocrine regulated secretory granules by guiding it into specialized subcellular compartments. ATP6AP1 is ubiquitously expressed, being mostly represented in brain, neuroendocrine, gastrointestinal, liver, connective and lymphoid tissues. In B-cells, it is reported to be involved in protein glycosylation, membrane trafficking and fusion events required for B-cells differentiation, antigen processing and antibody production.

Dysfunction and disease

Mutations in ATP6AP1 are linked to Immunodeficiency 47 [MIM:300972], which is an inherited X-linked recessive condition. This complex syndrome is associated with an immunodeficiency phenotype including recurrent bacterial infections and hypogammaglobulinemia, as well as liver dysfunction and defective glycosylation of serum proteins. In some patients, neurocognitive abnormalities are observed. The disease is caused by mutations in ATP6AP1 and up to date, only males carrying hemizygous mutations are described as affected (p.Leu74Pro, p.Leu144Pro, p.Leu181Arg, p.Tyr217Asn, p.Leu311Gln, p.Tyr313Cys, p.Glu346Lys and p.Met428Ile, p.Tyr77del, p.Arg9*,p.Pro134Leu, p.Ser98Arg). Due to the inheritance pattern, female mutation carriers are healthy and no homozygous affected females have been described to date. [Load More]

[Reviewed by Claudia Ballerini on 2024-10-01 13:33:05]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CVID17 Immunodeficiency, common variable, 17 XLRdict. icon 300972www icon 3 (1 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of ATP6AP1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000369762.7 CCDS35451 Select protein_coding 10 Yes 2054 NM_001183

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in ATP6AP1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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