Information on MS4A1
Alt. symbols: CD20 | B1 | Bp35 | MS4A2
Approved name: membrane spanning 4-domains A1
Alt. names: membrane-spanning 4-domains, subfamily A, member 1
Location: 11q12.2: 60455846 - 60470752 (+)
Gene type: protein_coding, 12 transcripts.
Scores: LoFtool: 0.694000 | pLI: 0.01538817 | LOEUF: 1.266
Gene Ontology (GO)
- Molecular function:
- Cell component: external side of plasma membrane [GO:0009897]; plasma membrane [GO:0005886]
- Biological process: cell surface receptor signaling pathway [GO:0007166]
Normal function
MS4A1 encodes CD20, a human B-lymphocyte-specific membrane protein that is widely expressed during B-cell ontogeny, from early pre-B-cell through plasma cell stages of differentiation. CD21 functions as a store-operated Ca2+ (SOC) channel component to promote Ca2+ influx after BCR activation. As such, it helps regulate the cellular Ca2+ influx necessary for B cell development, differentiation, and T-dependent and -independent humoral responses (PMID: 3925015, 7684739, 12920111, 18474602).
Dysfunction and disease
Kuijpers et al. (2010) identified a homozygous MS4A1 splice donor site mutation in a Turkish girl, born of consanguineous parents, who developed recurrent respiratory infections and bronchopneumonia at age 2 years. She initially had low IgG and IgA levels that evolved into only low IgG levels 4 years later. Laboratory studies showed normal B cell counts, but persistent hypogammaglobulinemia, reduced circulating memory B cells, and absent CD20 expression on B cells. Moreover, each parent showed ~ 50% of the CD20 expression seen in controls. Further characterization found decreased SHM frequency in IgG heavy chain genes and impaired T-dependent and -independent IgG production in vitro, but patient B cells showed otherwise normal proliferation and IgM production, indicating intact early B cell development (PMID: 20038800). [Load More]
[Reviewed by Xiao P. Peng on 2022-07-08]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of MS4A1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000345732.9 | 1 | CCDS31570 | Select | protein_coding | 8 | Yes | 3556 | NM_152866 |
211 | ENST00000534668.6 | CCDS31570 | protein_coding | 7 | No | 3467 | NM_021950,NM_152867 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in MS4A1
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.
ID | Year | Title | Journal | PMID | Variants |
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