Information on MS4A1

Basic details

Alt. symbols: CD20 | B1 | Bp35 | MS4A2

Approved name: membrane spanning 4-domains A1
Alt. names: membrane-spanning 4-domains, subfamily A, member 1

Location: 11q12.2: 60455846 - 60470752 (+)
Gene type: protein_coding, 12 transcripts.

Scores: LoFtool: 0.694000 | pLI: 0.01538817 | LOEUF: 1.266

HGNC: 7315

NCBI: 931, RefSeq: NG_023388.1

Ensembl: ENSG00000156738.18

LRG_140 | Status: public

OMIM: 112210

Expression | ProteinAtlas

Normal function

MS4A1 encodes CD20, a human B-lymphocyte-specific membrane protein that is widely expressed during B-cell ontogeny, from early pre-B-cell through plasma cell stages of differentiation. CD21 functions as a store-operated Ca2+ (SOC) channel component to promote Ca2+ influx after BCR activation. As such, it helps regulate the cellular Ca2+ influx necessary for B cell development, differentiation, and T-dependent and -independent humoral responses (PMID: 3925015, 7684739, 12920111, 18474602).

Dysfunction and disease

Kuijpers et al. (2010) identified a homozygous MS4A1 splice donor site mutation in a Turkish girl, born of consanguineous parents, who developed recurrent respiratory infections and bronchopneumonia at age 2 years. She initially had low IgG and IgA levels that evolved into only low IgG levels 4 years later. Laboratory studies showed normal B cell counts, but persistent hypogammaglobulinemia, reduced circulating memory B cells, and absent CD20 expression on B cells. Moreover, each parent showed ~ 50% of the CD20 expression seen in controls. Further characterization found decreased SHM frequency in IgG heavy chain genes and impaired T-dependent and -independent IgG production in vitro, but patient B cells showed otherwise normal proliferation and IgM production, indicating intact early B cell development (PMID: 20038800). [Load More]

[Reviewed by Xiao P. Peng on 2022-07-08 22:44:02]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CVID5 Immunodeficiency, common variable, 5 ARdict. icon 613495www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of MS4A1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000345732.9 1 CCDS31570 Select protein_coding 8 Yes 3556 NM_152866
211 ENST00000534668.6 CCDS31570 protein_coding 7 No 3467 NM_021950,NM_152867

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in MS4A1

ID Year Title Journal PMID Variants

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