Information on NCKAP1L
Basic details
Alt. symbols: HEM1
Approved name: NCK associated protein 1 like
Alt. names: hematopoietic protein 1
Location: 12q13.13: 54497752 - 54548243 (+)
Gene type: protein_coding, 8 transcripts.
Scores: LoFtool: 0.664000 | pLI: 0.99043966 | LOEUF: 0.325
Normal function
NCKAP1L encodes HEM1, an essential hematopoietic-specific regulator of the actin cytoskeleton with roles in lymphocyte development, activation, proliferation and homeostasis; erythrocyte membrane stability; and immune cell phagocytosis and migration (PMID: 16417406, 17696648, 32647003). In T cells, HEM1 is required for mTORC2-dependent AKT phosphorylation, cell proliferation and cytokine secretion (PMID: 32647003). As a subunit of the WAVE2 complex, which signals downstream of RAC to stimulate F-actin polymerization, it restrains T cells from excessive degranulation (PMID: 32647003). However, it also exerts WAVE-independent functions in neutrophil chemotaxis (PMID: 17696648).
Dysfunction and disease
Biallelic LOF mutations in NCKAP1L lead to an early onset immune dysregulatory syndrome with features of immunodeficiency, atopy and hyper-inflammation [OMIM: 618982] (PMID: 32766723, 32647003). Affected individuals develop severe bacterial and viral infections, hepatosplenomegaly, lymphoproliferation and HLH-like flares. Labs show dysgammaglobulinemia, increased B cells, irregular T-cell activation and cytokine responses, impaired immune synapse formation, and defective cellular migration. At t he cellular level, these defects are related to abnormal F-actin polymerization and altered intracellular signaling through impaired interactions with ARF1, a critical activator of the WAVE regulatory complex, and Abl interactor 2, another regulator of actin cytoskeleton dynamics. [Load More]
[Reviewed by Xiao P. Peng on 2022-06-21 17:08:28]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of NCKAP1L
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
202 | ENST00000545638.2 | CCDS53799 | protein_coding | 31 | No | 3612 | NM_001184976 | ||
201 | ENST00000293373.11 | CCDS31813 | Select | protein_coding | 31 | Yes | 8980 | NM_005337 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in NCKAP1L
ID | Year | Title | Journal | PMID | Variants |
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