Information on NCKAP1L

Basic details

Alt. symbols: HEM1

Approved name: NCK associated protein 1 like
Alt. names: hematopoietic protein 1

Location: 12q13.13: 54497752 - 54548243 (+)
Gene type: protein_coding, 8 transcripts.

Scores: LoFtool: 0.664000 | pLI: 0.99043966 | LOEUF: 0.325

HGNC: 4862

NCBI: 3071, RefSeq: .0

Ensembl: ENSG00000123338.13

LRG_ | Status: none

OMIM: 141180

Expression | ProteinAtlas

Normal function

NCKAP1L encodes HEM1, an essential hematopoietic-specific regulator of the actin cytoskeleton with roles in lymphocyte development, activation, proliferation and homeostasis; erythrocyte membrane stability; and immune cell phagocytosis and migration (PMID: 16417406, 17696648, 32647003). In T cells, HEM1 is required for mTORC2-dependent AKT phosphorylation, cell proliferation and cytokine secretion (PMID: 32647003). As a subunit of the WAVE2 complex, which signals downstream of RAC to stimulate F-actin polymerization, it restrains T cells from excessive degranulation (PMID: 32647003). However, it also exerts WAVE-independent functions in neutrophil chemotaxis (PMID: 17696648).

Dysfunction and disease

Biallelic LOF mutations in NCKAP1L lead to an early onset immune dysregulatory syndrome with features of immunodeficiency, atopy and hyper-inflammation [OMIM: 618982] (PMID: 32766723, 32647003). Affected individuals develop severe bacterial and viral infections, hepatosplenomegaly, lymphoproliferation and HLH-like flares. Labs show dysgammaglobulinemia, increased B cells, irregular T-cell activation and cytokine responses, impaired immune synapse formation, and defective cellular migration. At t he cellular level, these defects are related to abnormal F-actin polymerization and altered intracellular signaling through impaired interactions with ARF1, a critical activator of the WAVE regulatory complex, and Abl interactor 2, another regulator of actin cytoskeleton dynamics. [Load More]

[Reviewed by Xiao P. Peng on 2022-06-21 17:08:28]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD72 Immunodeficiency 72 with autoinflammation ARdict. icon 618982www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of NCKAP1L

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000545638.2 CCDS53799 protein_coding 31 No 3612 NM_001184976
201 ENST00000293373.11 CCDS31813 Select protein_coding 31 Yes 8980 NM_005337

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in NCKAP1L

ID Year Title Journal PMID Variants

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