Information on NFAT5

Basic details

Alt. symbols: TONEBP | KIAA0827 | NFATL1 | OREBP | NFATZ | NF-AT5

Approved name: nuclear factor of activated T cells 5
Alt. names: nuclear factor of activated T-cells 5, tonicity-responsive, nuclear factor of activated T-cells 5 | tonicity-responsive enhancer binding protein

Location: 16q22.1: 69565094 - 69704666 (+)
Gene type: protein_coding, 17 transcripts.

Scores: LoFtool: 0.439000 | pLI: 0.99999094 | LOEUF: 0.205

HGNC: 7774

NCBI: 10725, RefSeq: NG_029600.1

Ensembl: ENSG00000102908.23

LRG_1332 | Status: public

OMIM: 604708

Expression | ProteinAtlas

Normal function

The nuclear factor of activated T-cells 5 (NFAT5), was originally identified as a key transcription factor involved in the regulation of genes involved in osmotic stress to maintain cellular homeostasis against hypertonic and hyperosmotic environments. However, there is evidence that NFAT5 plays a role in the development and activation of immune cells, especially T cells and macrophages. In these immune cells NFAT5 induces the expression of different target genes and signalling pathways in both tonicity-dependent and -independent manners: i) In response to hyperosmotic stress, NFAT5 induces the generation of pathogenic TH17 cells and pro-inflammatory macrophages, contributing to autoimmune and inflammatory diseases. ii) NFAT5 can also be activated in tonicity-independent stimuli (Toll-like receptor activation and inflammatory cytokines) and promote immune cell survival, proliferation, migration, and angiogenesis (Lee, N. et al. 2019).

Dysfunction and disease

Haploinsufficiency of NFAT5 has been reported to be associated with autoimmune enterocolopathy (AIE) (Boland 2015 J Immunol, PMID:25667416). Boland and colleagues described the case of a male patient with immunodeficiency and AIE, who started to present IBD-like symptoms at the age of 7 years. He was discovered to carry a de-novo heterozygous 559-kb deletion at 16q22.1 that included NFAT5 and 7 additional genes. The patient showed a 6-fold reduction in NFAT5 protein expression and 5-fold reducti on in mRNA levels. Subsequently, the authors identified 3 patients with AIE that also presented loss of NFAT5 heterozygosity. Finally, testing NFAT5 mRNA expression in rectal biopsies from IBD patients (7 with UC and 6 with CD), they observed that all of them had half the expression of the 7 controls tested. Moreover, NFAT5 has been implicated in the pathogenesis of rheumatoid arthritis, as its knockdown seems to reduce synovial proliferation and angiogenesis in chronic arthritis human cells and mice models (Yoon H. et al. 2011). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-11-18 11:20:42]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IBD34 Inflammatory bowel disease 34 ADdict. icon - 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of NFAT5

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000349945.7 1 CCDS45518 Select protein_coding 15 Yes 13289 NM_138713
203 ENST00000393742.7 nonsense_mediated_decay 15 No 13067 XM_054379407
202 ENST00000354436.6 CCDS10881 protein_coding 14 No 13229 NM_001367709,NM_006599,NM_138714,NM_173214,NM_173215
209 ENST00000567239.5 CCDS45519 protein_coding 15 No 6376 NM_001113178

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in NFAT5

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

Find laboratories offering tests

Check