Information on OAS1

Basic details

Alt. symbols: OIAS | OIASI | IFI-4

Approved name: 2'-5'-oligoadenylate synthetase 1
Alt. names: 2',5'-oligoadenylate synthetase 1 (40-46 kD), 2'-5'-oligoadenylate synthetase 1, 40/46kDa | 2'-5' oligoadenylate synthase 1

Location: 12q24.13: 112905856 - 112933219 (+)
Gene type: protein_coding, 33 transcripts.

Scores: LoFtool: 0.979000 | pLI: 0.00123924 | LOEUF: 0.927

HGNC: 8086

NCBI: 4938, RefSeq: NG_011530.2

Ensembl: ENSG00000089127.15

LRG_ | Status: none

OMIM: 164350

Expression | ProteinAtlas

Normal function

OAS1 encodes an interferon-induced, dsRNA-activated antiviral enzyme, which belongs to the 2-5A synthetase family and that plays a critical role in cellular innate antiviral response. This enyzme synthesizes higher oligomers of 2'-5'-oligoadenylates (2-5A) from ATP which then bind to the inactive monomeric form of ribonuclease L (RNase L) leading to its dimerization and subsequent activation. Activation of RNase L leads to degradation of cellular as well as viral RNA, resulting in the inhibition of protein synthesis, thus terminating viral replication. OAS1 can mediate the antiviral effect either via the classical RNase L-dependent pathway or via an alternative antiviral pathway independent of RNase L. The secreted form displays antiviral effect against vesicular stomatitis virus (VSV), herpes simplex virus type 2 (HSV-2), and encephalomyocarditis virus (EMCV) and stimulates the alternative antiviral pathway independent of RNase L. In addition, OAS1 may also play a role in other cellular processes such as apoptosis, cell growth, differentiation and gene regulation.

Dysfunction and disease

OAS1 polymorphisms have been implicated as both protective and risk alleles for severe responses to viral infections including COVID-19 (PMID: 33633408, 33791713, 34282422, 34581622). Cho et al. (2018) identified 3 different rare de novo heterozygous missense OAS1 variants in 5 Japanese patients, including 3 siblings, with infantile-onset pulmonary alveolar proteinosis (PAP) and hypogammaglobulinemia (PMID: 29455859), in some cases after documented viral infection. 3 of 5 individuals surviving b eyond age 1 year old showed low IgG, IgA, and IgM despite the lack of an overt B cell deficiency, 3 showed significant inflammation, and 4 showed splenomegaly. BAL in one patient showed small and non-foamy alveolar macrophages (AMs), suggesting dysfunction of maturation and/or phagocytosis of AMs rather than impaired catabolism of phagocytosed lung surfactant. The authors hypothesized that these variants exerted a GOF effect, leading to an exaggerated immune reaction in response to viral infections, AM dysfunction and impaired catabolism of lung surfactant. Magg et al. (2021) identified the same 3 variants and one additional de novo heterozygous missense variant in 6 patients (1 previously reported) with early-onset recurrent fevers, dermatitis, IBD, PAP, and hypogammaglobulinemia (PMID: 34145065). Patients had normal T-cell counts, but low monocytes and B-cells during flares. The authors showed that the OAS1 variants resulted in gain of dsRNA-independent activity upon IFN induction, resulting in RNase L-mediated RNA cleavage, transcriptomic alteration, translational arrest and monocyte/macrophage and B cell dysfunction and apoptosis. RNase L inhibition by curcumin modulated the clinical phenotype, which was corrected in 2 of 4 patients receiving alloHSCT. Lee et al. (2023) identified biallelic OAS1 LOF mutations in children with MIS-C, acting via production of SARS-CoV-2-triggered, MAVS-mediated inflammatory cytokines by mononuclear phagocytes (PMID: 36538032). [Load More]

[Reviewed by Xiao P. Peng on 2024-10-26 16:58:28]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD100 OAS1 immunodeficiency ADdict. icon Gain of Function 618042www icon 10 (8 fams)
MIS-C1 Multisystemic inflammatory syndrome after COVID, 1 ARdict. icon Loss of Function - 0 (0 fams)

Transcripts of OAS1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
208 ENST00000551241.6 CCDS81742 protein_coding 6 No 2416 NM_001320151,NM_001406025,NM_001412228
202 ENST00000445409.7 CCDS31905 protein_coding 6 No 1684 NM_001032409,NM_001406020
212 ENST00000675868.2 protein_coding 5 No 1373 NM_001406024
210 ENST00000553152.2 protein_coding 6 No 890 NM_001406022,NM_001406023,NM_001406029
201 ENST00000202917.10 CCDS41838 Select protein_coding 6 Yes 1631 NM_016816
203 ENST00000452357.7 CCDS44980 protein_coding 5 No 1990 NM_002534
218 ENST00000679971.1 protein_coding 4 No NM_001406026,NM_001406030
221 ENST00000680455.1 protein_coding 4 No NM_001406027
231 ENST00000681700.1 protein_coding 6 No NM_001406021

Published variants

Found 5 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
A76V EX2 305 c.227C>T p.Ala76Val missense_variant Pathogenic 4
C109Y EX2 404 c.326G>A p.Cys109Tyr missense_variant Pathogenic 4
V121G EX2 619 c.362T>G p.Val121Gly missense_variant Pathogenic 1
V121G EX2 440 c.362T>G p.Val121Gly missense_variant Pathogenic 1
L198V EX3 670 c.592C>G p.Leu198Val missense_variant Pathogenic 1

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in OAS1

ID Year Title Journal PMID Variants
161 2018 Heterozygous Mutations in OAS1 Cause Infantile-Onset Pulmona... Am. J. Hum. Genet. 29455859 3
607 2021 Heterozygous OAS1 gain-of-function variants cause an autoinf... Sci. Immunol. 34145065 4

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