Information on ACP5
Basic details
Alt. symbols: TRAP | HPAP
Approved name: acid phosphatase 5, tartrate resistant
Alt. names: tartrate-resistant acid phosphatase, human purple acid phosphatase
Location: 19p13.2: 11574653 - 11579993 (-)
Gene type: protein_coding, 27 transcripts.
Scores: LoFtool: 0.138000 | pLI: 0.12356835 | LOEUF: 0.724
Normal function
ACP5 encodes tartrate-resistant acid phosphatase (TRAP), a metalloenzyme involved in osteopontin/bone sialoprotein dephosphorylation whose expression is restricted to mononuclear phagocytes (PMID: 32214327, 2338077). TRAP exists as two isoforms with different optimal pH and specific activities, derived from differential post-translational processing of a central regulatory loop peptide (PMID: 15929988). Isoform a is a monomeric protein with intact loop peptide, while isoforms 5a and 5b result from proteolytic cleavage into 23 kDa and 16 kDa disulfide-linked heterodimers that are differentially compartmentalized. In macrophages and dendritic cells, only isoform 5a is secreted from cells, making this a good marker for systemic macrophage functions and chronic inflammatory activity (PMID: 17369130). In osteoclasts, on the other hand, isoform 5b is released into circulation with other matrix products during bone resorption, making this a good marker for osteoclast activity (PMID: 15312243).
Dysfunction and disease
Biallelic mutations in ACP5 lead to Spondyloenchondrodysplasia with immune dysregulation (SPENCDI) [OMIM: 607944], an immuno-osseous dysplasia combining the typical metaphyseal and vertebral bone lesions of spondyloenchondrodysplasia (SPENCD) with immune dysfunction and neurologic involvement. The skeletal dysplasia is characterized by radiolucent and irregular spondylar and metaphyseal lesions that represent islands of chondroid tissue within bone. Vertebral bodies show dorsally accentuated pla tyspondyly with disturbance of ossification. Variable clinical findings include short stature, rhizomelic micromelia, increased lumbar lordosis, barrel chest, facial anomalies, and clumsy movements. CNS involvement includes spasticity, intellectual disability, and cerebral calcifications. Patients may show some combination of immunodeficiency, auto-inflammation and/or auto-immunity, but the clinical spectrum can vary significantly even within families. Patients show absent serum expression of TRAP, increased levels of serum IFN-alpha and upregulated interferon gene signatures (PMID: 26951490). [Load More]
[Reviewed by Xiao P. Peng on 2022-06-22 07:13:52]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of ACP5
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
209 | ENST00000591319.2 | protein_coding | No | 581 | NM_001322023 | ||||
202 | ENST00000412435.7 | CCDS12265 | protein_coding | 6 | No | 1527 | NM_001111036 | ||
201 | ENST00000218758.10 | CCDS12265 | protein_coding | 7 | No | 1630 | NM_001111035 | ||
212 | ENST00000648477.1 | 1 | CCDS12265 | Select | protein_coding | 5 | Yes | 1381 | NM_001611 |
211 | ENST00000592828.7 | protein_coding | No | 560 | XM_005259938 | ||||
213 | ENST00000649386.2 | protein_coding | No | 558 | XM_011528069 | ||||
213 | ENST00000695791.1 | protein_coding | No | NM_001111034 | |||||
216 | ENST00000695811.1 | protein_coding | No | XM_047438944 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in ACP5
ID | Year | Title | Journal | PMID | Variants |
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