Information on BLM

Basic details

Alt. symbols: BS | RECQL3 | RECQ2

Approved name: BLM RecQ like helicase
Alt. names: Bloom syndrome, Bloom syndrome RecQ like helicase

Location: 15q26.1: 90717346 - 90816166 (+)
Gene type: protein_coding, 13 transcripts.

Scores: LoFtool: 0.959000 | pLI: 0.00000000 | LOEUF: 0.751

HGNC: 1058

NCBI: 641, RefSeq: NG_007272.1

Ensembl: ENSG00000197299.13

LRG_20 | Status: public

OMIM: 604610

Expression | ProteinAtlas

Normal function

The BLM gene encodes the RECQL3 protein, a member of a protein family called RecQ helicases. Helicases are enzymes that bind to DNA and unwind the double helix so that DNA replication or DNA repair can take place. RecQ helicases are known as the "caretakers of the genome" because of their help in maintaining the DNA structure and integrity. During DNA replication, the copied DNA from each chromosome is arranged into two identical structures, called sister chromatids, which are attached to one another during the early stages of cell division. Sister chromatids occasionally exchange small sections of DNA during this time and research suggest that these exchanges may be a response to DNA damage during the copying process. The BLM protein helps to prevent excess sister chromatid exchanges and is also involved in other processes that help maintain the stability of the DNA during the replication process.

Dysfunction and disease

At least 70 distinct mutations in this gene have been identified in patients with Bloom syndrome, a rare disorder characterized by short stature, a skin rash that develops after sun exposure, and a greatly increased risk of cancer. One particular mutation (blmAsh mutation, c.2281delATCTGAinsTAGATTC) causes almost all cases of Bloom syndrome among people of Central and Eastern European (Ashkenazi) Jewish descent. The blmAsh mutation results in the production of an abnormally short, nonfunctional version of the BLM protein. However, there also many other truncating mutations known that also reduce the amount of functional BLM protein. The lack of functional BLM protein leads to an akteration of the frequency of sister chromatid exchange (about 10 times higher than average). In addition, chromosome breakage occurs more frequently in affected individuals. All of these changes are associated with gaps and breaks in the DNA that impair normal cell activities and cause the health problems associated with this condition. Without the BLM protein, the cell is less able to repair DNA damage caused by ultraviolet light, which results in increased sun sensitivity. Genetic changes that allow cells to divide in an uncontrolled way lead to the cancers that occur in people with Bloom syndrome. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2023-12-14 14:10:25]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
BLMS Bloom syndrome ARdict. icon 210900www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of BLM

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
208 ENST00000560509.5 CCDS73782 protein_coding 20 No 3966 NM_001287247
201 ENST00000355112.8 1 CCDS10363 Select protein_coding 22 Yes 5240 NM_000057,NM_001287246,NM_001287248

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
1994Uniparental disomy7912890
-Cryptic splicing-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in BLM

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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