Information on PIK3CG

Basic details

Alt. symbols: PI3CG | PI3K | PI3Kgamma | PIK3 | p110gamma | p120PI3K

Approved name: phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma
Alt. names: phosphoinositide-3-kinase, catalytic, gamma polypeptide, phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma

Location: 7q22.3: 106865278 - 106908980 (+)
Gene type: protein_coding, 5 transcripts.

Scores: LoFtool: 0.490000 | pLI: 0.56396387 | LOEUF: 0.595

HGNC: 8978

NCBI: 5294, RefSeq: NG_050579.1

Ensembl: ENSG00000105851.11

LRG_ | Status: none

OMIM: 601232

Expression | ProteinAtlas

Normal function

PIK3CG encodes the class I catalytic subunit of PI3K. Like other class I catalytic subunits (p110-alpha p110-beta, and p110-delta), the encoded protein binds a p85 regulatory subunit to form PI3K. Class I PI3Ks phosphorylate PtdIns(4,5)P2 to produce PtdIns(3,4,5)P3. PIP3 recruits PH domain-containing proteins to the membrane, including AKT1 and PDPK1, and therefore acts as a second messenger that potently activates diverse signaling cascades secondary to growth factors, cytokines, chemokines, and antigen receptor stimulation, among other inputs. Together with PIK3CD is involved in natural killer (NK) cell development, in T-lymphocyte development, in neutrophil respiratory burst. It is also required for B-lymphocyte development and signaling.

Dysfunction and disease

Bi-allelic, loss-of-function mutations in PIK3CG resulting in absence of the p110gamma catalytic subunit of PI3Kgamma, have been recently reported in a female patient with a history of childhood-onset antibody defects, cytopenias, and T lymphocytic pneumonitis and colitis. The patient showed also reduced peripheral blood memory B, memory CD8 T, and regulatory T cells and increased CXCR3+ homing CD4 T cells. The author also described that PI3Kgamma-deficient macrophages and monocytes produced ele vated inflammatory IL-12 and IL-23 in a GSK3alfa/beta-dependent manner upon TLR stimulation. The childhood of patient A.1 was remarkable for recurrent sinopulmonary, ear, skin, and urinary tract infections (commonly with S. aureus), chronic nasal congestion, and eczema. Additional episodes of colitis were sometimes associated with stool cultures positive for C. difficile and Salmonella. Vaccination responses were protective for tetanus, borderline protective for diphtheria, and protective for 4 of 23 pneumococcal strains. Warm autoimmune hemolytic anemia at nine years of age (preceding the initial pneumonitis by several months) was treated with steroids and blood transfusions; a recurrence of autoimmune cytopenias at seventeen years prompted CD20+ B cell depletion with rituximab. The patient inherited the p.R982fs mutation from her healthy mother and the p.R1021P (kinase domain) from her healthy father. The authors assessed PIK3CG expression in T cell blasts and found reduced p110gamma protein in both parents and virtually absent expression in the patient. The R982fs mutation is predicted to cause nonsense-mediated decay due to a premature stop codon in the penultimate exon. The R1021P substitution in the kinase domain destabilizes hydrogen bonds predicted to be necessary for protein stability and nearly completely abolishes in vitro recombinant kinase activity of p110gamma alone or bound to either p84 or p101 subunit. In addition, a p.V282A monoallelic mutation in PIK3CG has been described in a 44-year-old man who presented with a history of chronic purulent sinusitis, a chronic fungal rash of the scrotum, and chronic pelvic pain; tough the functional consequence of this variant was not addressed in that study. [Load More]

[Reviewed by Hanna Haberstroh on 2020-07-27 15:13:08]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD97 Immunodeficiency 97 ARdict. icon Loss of Function 619802www icon 2 (2 fams)
CICPP ?Chronic infections and chronic pelvic pain ADdict. icon - 1 (1 fams)

Transcripts of PIK3CG

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000359195.3 CCDS5739 protein_coding 11 No 5377 NM_002649
205 ENST00000496166.6 CCDS5739 Select protein_coding 11 Yes 7059 NM_001282426,NM_001282427

Published variants

Found 5 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
R49S EX2 302 c.145C>A p.Arg49Ser missense_variant Pathogenic 1
V282A EX2 1002 c.845T>C p.Val282Ala missense_variant Pathogenic 1
R982X EX10 3101 c.2944del p.Arg982GlufsTer6 frameshift_variant Pathogenic 1
R1021P EX11 3219 c.3062G>C p.Arg1021Pro missense_variant Pathogenic 1
N1085S EX11 3411 c.3254A>G p.Asn1085Ser missense_variant Pathogenic 1

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in PIK3CG

ID Year Title Journal PMID Variants
755 2020 Germline biallelic PIK3CG mutations in a multifaceted immuno... Haematol. J. 33054089 2
756 2019 Human PI3K? deficiency and its microbiota-dependent mouse mo... Nat. Commun. 31554793 2
757 2013 Novel PI3K? mutation in a 44-year-old man with chronic infec... Plos one 23861857 1

Phenotypic & functional assays available?

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