Information on PIK3R1

Basic details

Alt. symbols: GRB1 | p85-ALPHA | p85

Approved name: phosphoinositide-3-kinase regulatory subunit 1
Alt. names: phosphoinositide-3-kinase, regulatory subunit 1 (alpha) | phosphoinositide-3-kinase regulatory subunit alpha

Location: 5q13.1: 68215740 - 68301821 (+)
Gene type: protein_coding, 33 transcripts.

Scores: LoFtool: 0.295000 | pLI: 0.99824049 | LOEUF: 0.228

HGNC: 8979

NCBI: 5295, RefSeq: NG_012849.2

Ensembl: ENSG00000145675.16

LRG_453 | Status: public

OMIM: 171833

Expression | ProteinAtlas

Normal function

PIK3R1 encodes the PI3K class IA regulatory subunits (p85?, p55?, p50?), though p85? is the most abundant. Though it can also bind p110? and p110?, p85? forms the PI3K? enzyme in combination with a p110? catalytic subunit to engage and transduce signaling from immune cell surface receptors such as BCRs, TCRs, cytokine and costimulatory receptors (PMID: 27616589). As a regulatory subunit, p85? can prevent proteolytic degradation of p110, inhibit p110 catalytic activity and recruit p110 subunit to phosphotyrosines on plasma membrane proteins.

Dysfunction and disease

Monoallelic PIK3R1 mutations are associated with two autosomal dominant conditions - Activated p110-d syndrome 2 (APDS2) [MIM:616005], and SHORT syndrome [MIM:269880], a multi-system progeroid syndrome associated with Akt/mTor pathway downregulation. Moreover, a rare homozygous nonsense mutation leading to absent p85? has been described in one patient with a specific and severe block in early B-cell differentiation, designated autosomal recessive Agammaglobulinemia 7 [OMIM:615214] (PMID: 2235193 3). APDS2 is generally caused by monoallelic splice acceptor and donor site mutations in exon 11 (coding exon 10) that result in in-frame exon-skipping and the generation of a shortened p85? with retained ability to stabilize p110? but lost inhibitory activity, thus resulting in inappropriate gain of Akt/mTOR signaling (PMID: 25488983, 27076228, 27221134). This explains why so many of the features of APDS2 phenocopy APDS1 - recurrent early-onset sino-pulmonary infections, diverse autoimmune and autoinflammatory manifestations, persistent EBV and/or CMV viremia, and chronic benign lymphoproliferative disease as well as increased risk for B-cell malignancies. Patients also show impaired B-cell maturation with aberrant responses to stimuli and subsequent self-destruction resulting in progressive B-cell lymphopenia and increased frequency of transitional B cells, as well as accelerated T cell maturation and senescence resulting in decreased naive CD4+ and CD8+ T-cell numbers and increased number and frequency of CD8+ effector/memory T cells. However, some non-immunologic manifestations such as growth retardation, joint hyperextensibility, insulin resistance, and neurodevelopmental delay may be reminiscent of SHORT syndrome (PMID: 26497935). However, both clinical and immune phenotypes can be extremely variable, making it possible for APDS to also be diagnosed as CVID, combined immunodeficiency or hyper-IgM syndrome (PMID: 25939554, 27076228, 27221134). [Load More]

[Reviewed by Xiao P. Peng on 2022-05-02 14:38:53]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
AGM7 Agammaglobulinemia 7 ARdict. icon 615214www icon 0 (0 fams)
APDS2 Activated p110-d syndrome 2 ADdict. icon 616005www icon 3 (3 fams)
SHORTS SHORT syndrome ADdict. icon 269880www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of PIK3R1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
211 ENST00000521381.6 1 CCDS3993 Select protein_coding 16 Yes 6975 NM_181523
202 ENST00000336483.10 CCDS3995 protein_coding 10 No 2439 NM_181504
204 ENST00000517643.2 processed_transcript 16 No XM_047417315
201 ENST00000320694.13 CCDS3994 protein_coding 10 No 2625 NM_181524
218 ENST00000697458.1 CCDS3993 protein_coding 16 No XM_017009585
227 ENST00000697467.1 protein_coding No NM_001242466

Published variants

Found 4 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
E217K EX6 1229 c.649G>A p.Glu217Lys missense_variant Uncertain significance 3
Y2F EX1 221 c.5A>T p.Tyr2Phe missense_variant Uncertain significance 0
EX11+1G>A IN11 c.1425+1G>A EX11-skipping ALTERS SPLICING! Pathogenic 2
EX11+1G>C IN11 c.1425+1G>C EX11-skipping ALTERS SPLICING! Pathogenic 1

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in PIK3R1

ID Year Title Journal PMID Variants
401 2014 A human immunodeficiency caused by mutations in the PIK3R1 g... J. Clin. Investig. 25133428 1
402 2014 Heterozygous splice mutation in PIK3R1 causes human immunode... JEM 25488983 2
403 2015 Altered germinal center reaction and abnormal B cell periphe... Clin. Immunol. 25939554 1
404 2016 Dominant Splice Site Mutations in PIK3R1 Cause Hyper IgM Syn... JoCI 27076228 1
501 2016 Clinical and immunologic phenotype associated with activated... JACI 27221134 1
537 2022 Copy Number Analysis in a Large Cohort Suggestive of Inborn ... JoCI 35486341 1
1020 2019 Clinical Manifestations, Immunological Characteristics and G... Int. Arch. Allergy Immunol. 31117086 1
1107 2021 Resolving the polygenic aetiology of a late onset combined i... Clin. Immunol. 34922003 2
1112 2022 Integrating Clinics, Laboratory, and Imaging for the Diagnos... Front. Immunol. 35281075 1

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