Information on PMS2

Basic details

Alt. symbols: PMSL2 | H_DJ0042M02.9 | HNPCC4 | MLH4

Approved name: PMS1 homolog 2, mismatch repair system component
Alt. names: postmeiotic segregation increased (S. cerevisiae) 2, PMS2 postmeiotic segregation increased 2 (S. cerevisiae), PMS1 homolog 2, mismatch repair protein

Location: 7p22.1: 5970925 - 6009130 (-)
Gene type: protein_coding, 71 transcripts.

Scores: LoFtool: 0.382000 | pLI: 0.00000000 | LOEUF: 1.266

HGNC: 9122

NCBI: 5395, RefSeq: NG_008466.1

Ensembl: ENSG00000122512.17

LRG_161 | Status: public

OMIM: 600259

Expression | ProteinAtlas

Normal function

The PMS2 encodes a mismatch repair endonuclease, which is an enzyme that plays an essential role in repairing DNA. This protein corrects DNA replication errors during cell division. The PMS2 protein dimerizes with the protein MLH1 to form a complex that coordinates the activities of other proteins that repair DNA replication errors. As an endonuclease, PMS2 introduces nicks into a discontinuous DNA strand, which allows for the replacement of the wrong DNA sequence. The PMS2 gene is a member of a set of genes known as the mismatch repair (MMR) genes.

Dysfunction and disease

Both monoallelic and biallelic mutations in PMS2 have been primarily associated with hereditary non-polyposis colorectal cancer type 4 [MIM:614337] and with mismatch repair cancer syndrome [MIM:276300], which is also known as Turcot syndrome and is characterized by the occurrence of a primary brain tumor and multiple colorectal polyps. Peron et al. (2008) also reported that PMS2 deficiency leads to a class switch recombination defect and causes hyper-IgM syndrome. The authors reported three pati ents with low number of B cells, reduced IgA and IgG, increased IgM levels, and abnormal antibody responses. The patients presented with recurrent infections, café-au-lait spots, lymphoma, colorectal carcinoma and brain tumors (PMID:18824584). In detail, various genetic alterations - deletions leading to frameshift and insert of a stop codon, intronic variants, missense mutations and truncating point mutations - have been detected in affected patients. Three missense mutations in PMS2 (P511K, T597S and M622I) have been functionally assessed and shown to affect the binding affinity of PMS2 towards MLH1 (PMID: 11793469). It is worth mentioning that detection of mutations in PMS2 is complicated by the occurrence of several PMS2 pseudogenes containing copies of exons of the PMS2 gene. Sequence exchange events between PMS2 and the pseudogenes result in allelic diversity and difficulties in mutation analysis. [Load More]

[Reviewed by Xiao P. Peng on 2022-07-08 21:44:27]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
HNPCC4 Colorectal cancer, hereditary nonpolyposis type 4 ADdict. icon 614337www icon 0 (0 fams)
MMRCS4 Mismatch repair cancer syndrome 4 ARdict. icon 619101www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of PMS2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
208 ENST00000642292.1 CCDS87474 protein_coding 14 No 2679 NM_001322004
203 ENST00000382321.5 protein_coding 11 No 1386 NM_001406912
201 ENST00000265849.12 1 CCDS5343 Select protein_coding 15 Yes 5093 NM_000535,NM_001406868,NM_001406872
254 ENST00000699839.1 protein_coding 16 No NM_001406866
255 ENST00000699840.2 protein_coding 15 No NM_001406885
210 ENST00000699752.1 protein_coding No NM_001322006,NM_001406870,NM_001406884
212 ENST00000699754.1 protein_coding No NM_001406873,NM_001406886
218 ENST00000699760.1 protein_coding No NM_001322007,NM_001322008,NM_001406876,NM_001406883,NM_001406901,NM_001406902,NM_001406903
219 ENST00000699761.1 protein_coding No NM_001406889,NM_001406892,NM_001406899,NM_001406904
220 ENST00000699762.1 protein_coding No NM_001322011,NM_001322012,NM_001322013,NM_001406909,NM_001406911
224 ENST00000699766.1 protein_coding No NM_001322014
226 ENST00000699768.1 protein_coding No NM_001406871
229 ENST00000699811.1 protein_coding No NM_001322003,NM_001322015,NM_001406878,NM_001406879,NM_001406880,NM_001406881,NM_001406890,NM_001406891,NM_001406893,NM_001406905,NM_001406908,NM_001406910
235 ENST00000699818.1 protein_coding No NM_001322005,NM_001406877,NM_001406882,NM_001406894,NM_001406897,NM_001406898
238 ENST00000699821.1 protein_coding No NM_001322009,NM_001406875,NM_001406887,NM_001406888
240 ENST00000699823.1 protein_coding No NM_001406895
242 ENST00000699825.1 protein_coding No NM_001322010,NM_001406900,NM_001406906,NM_001406907
244 ENST00000699827.1 protein_coding No NM_001406874
252 ENST00000699837.1 protein_coding No NM_001406896
263 ENST00000699930.2 protein_coding No NM_001406869

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology - NM_000535.6: EX1-5 (90-98%); NM_000535.6: EX11-14 (>98%); NM_000535.6: EX9 (90-98%)
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in PMS2

ID Year Title Journal PMID Variants

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