Information on BRCA1

Basic details

Alt. symbols: RNF53 | BRCC1 | PPP1R53 | FANCS

Approved name: BRCA1 DNA repair associated
Alt. names: breast cancer 1, early onset, breast cancer 1 | BRCA1/BRCA2-containing complex, subunit 1, protein phosphatase 1, regulatory subunit 53, Fanconi anemia, complementation group S

Location: 17q21.31: 43044295 - 43170245 (-)
Gene type: protein_coding, 41 transcripts.

Scores: LoFtool: 0.002070 | pLI: 0.00000000 | LOEUF: 0.915

HGNC: 1100

NCBI: 672, RefSeq: NG_005905.2

Ensembl: ENSG00000012048.26

LRG_292 | Status: public

OMIM: 113705

Expression | ProteinAtlas

Normal function

BRCA1 encodes an E3 ubiquitin (Ub) ligase that specifically mediates the formation of 'Lys-6'-linked polyUb chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. Its E3 Ub ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Amongst other roles, BRCA1 is important for recombinational repair via interactions with PALB2 and FANCD2, regulating centrosomal microtubule nucleation, G2-M cell cycle checkpoint and progression, cell cycle arrest after exposure to ionizing irradiation in both S and G2 phase, and transcriptional regulation of P21 in response to DNA damage (PMID 20160719).

Dysfunction and disease

Monoallelic BRCA1 mutations are associated with an autosomal dominant hereditary cancer predisposition syndrome predominantly featuring increased risk for breast (in both females and males) and ovarian cancer (including fallopian tube and primary peritoneal cancers) [MIM:604370], and to a lesser extent other cancers such as prostate and pancreatic cancers (~2-fold increased risk for the latter) [MIM:614320]. Women with a BRCA1 mutation have an estimated 50-87% lifetime risk of breast cancer, wit h the lower risk estimates derived from population-based data and the higher estimates derived from patients ascertained through high-risk clinics. BRCA1-associated breast cancers tend to occur pre-menopausally, though some women and families have later onset. The lifetime risk of ovarian cancer is estimated to be as high as 44%, with average age at diagnosis around 50 years. For female BRCA1 mutation carriers who have had breast cancer, the risk for a second primary breast cancer is estimated at 30% in ten years, with a lifetime estimate of 40-60%, depending on the age at diagnosis of the first breast cancer (i.e. women diagnosed with breast cancer at a younger age will have a higher chance of a second primary breast cancer than those first diagnosed at later ages). For males, the lifetime risk of breast cancer and the lifetime risk of prostate cancer are also slightly increased. Biallelic missense, nonsense, and frameshift BRCA1 mutations are associated with Fanconi anemia, complementation group S [MIM:617883], an autosomal recessive disorder characterized by developmental delay apparent from infancy, short stature, microcephaly, and coarse dysmorphic features. Some patients may have radial ray anomalies, bone marrow failure and cytopenias, and increased risk of cancer. As for other FA subtypes, patient cells show defective DNA repair and increased stress-induced chromosomal breakage. Additionally, these patients may have a family history of cancer in members who are heterozygous mutation carriers. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-03-24 10:37:33]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
BRCA1 Breast-ovarian cancer, familial, susceptibility to 1 ADdict. icon 604370www icon 1 (1 fams)
PNCA4 Pancreatic cancer, susceptibility to, 4 ADdict. icon 614320www icon 0 (0 fams)
FANCS Fanconi anemia, complementation group S ARdict. icon 617883www icon 1 (1 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of BRCA1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
224 ENST00000497488.2 protein_coding 15 No 779 NM_001407965,NM_001407966,NM_001407967
208 ENST00000468300.5 CCDS11455 protein_coding 22 No 3273 NM_001407854,NM_001407858,NM_001407859,NM_001407860,NM_001407861,NM_001408472,NM_001408473,NM_007299
230 ENST00000634433.2 protein_coding 21 No 2534 NM_001407648,NM_001407664,NM_001407665,NM_001407666,NM_001407667,NM_001407668,NM_001407669,NM_001407674,NM_001407675,NM_001407676,NM_001407677,NM_001407678,NM_001407679,NM_001407680,NM_001407681,NM_001407682,NM_001407683,NM_001407862,NM_001407863,NM_00140
213 ENST00000476777.6 protein_coding 23 No 769 NM_001407610,NM_001407611,NM_001407612,NM_001407613,NM_001407614,NM_001407615,NM_001407627,NM_001407628,NM_001407629,NM_001407630,NM_001407631,NM_001407632,NM_001407644,NM_001407645
201 ENST00000352993.7 protein_coding 22 No 3668 NM_001408418,NM_001408419,NM_001408420,NM_001408421,NM_001408422,NM_001408423,NM_001408424,NM_001408431
228 ENST00000618469.2 protein_coding 23 No 718 NM_001407593,NM_001407594,NM_001407596,NM_001407605,NM_001407625,NM_001407684
206 ENST00000461574.2 protein_coding 23 No 726 NM_001407616,NM_001407617,NM_001407618,NM_001407619,NM_001407620,NM_001407621,NM_001407622,NM_001407623,NM_001407633,NM_001407634,NM_001407635,NM_001407636,NM_001407637,NM_001407638,NM_001407639,NM_001407640,NM_001407641,NM_001407642,NM_001407647
215 ENST00000478531.6 protein_coding 23 No 1972 NM_001407984,NM_001407985,NM_001407986,NM_001407991,NM_001407992,NM_001408392,NM_001408396,NM_001408397,NM_001408398,NM_001408399,NM_001408400,NM_001408401,NM_001408402,NM_001408407,NM_001408413,NM_001408416,NM_001408451
233 ENST00000644555.2 protein_coding 24 No 558 NM_001408410,NM_001408452,NM_001408453,NM_001408455,NM_001408456,NM_001408458,NM_001408462,NM_001408463,NM_001408465,NM_001408466,NM_001408468,NM_001408469,NM_001408470,NM_001408478,NM_001408479,NM_001408480,NM_001408481,NM_001408482,NM_001408483,NM_00140
234 ENST00000652672.2 protein_coding No 2291 NM_001407571,NM_001407694,NM_001407695,NM_001407696,NM_001407697,NM_001407724,NM_001407725,NM_001407726,NM_001407727,NM_001407728,NM_001407729,NM_001407730,NM_001407731,NM_001407733,NM_001407734,NM_001407735,NM_001407737,NM_001407739,NM_001407740,NM_00140
219 ENST00000491747.6 CCDS11454 protein_coding 23 No 2379 NM_001407973,NM_001407974,NM_001407975,NM_001407976,NM_001407977,NM_001407978,NM_001407979,NM_001407980,NM_001407981,NM_001407982,NM_001407983,NM_001407990,NM_001407993,NM_001408403,NM_001408404,NM_001408406,NM_001408408,NM_001408412,NM_001408414,NM_00140
212 ENST00000473961.6 protein_coding 21 No 958 NM_001407649,NM_001407670,NM_001407671,NM_001407672,NM_001407673,NM_001407685,NM_001407686,NM_001407687,NM_001407688,NM_001407689,NM_001407690,NM_001407691,NM_001407874,NM_001407875,NM_001407940,NM_001407941,NM_001407954,NM_001407955,NM_001407956,NM_00140
214 ENST00000477152.6 protein_coding 22 No 1980 NM_001407653,NM_001407654,NM_001407656,NM_001407657,NM_001407658,NM_001407659,NM_001407660,NM_001407661,NM_001407662,NM_001407663
232 ENST00000644379.2 protein_coding 24 No 2571 NM_001407581,NM_001407582,NM_001407587,NM_001407970,NM_001407971,NM_001407972,NM_001408409
210 ENST00000471181.7 CCDS11456 protein_coding 24 No 7270 NM_001407583,NM_001407585,NM_001407590,NM_001407591,NM_007300
209 ENST00000470026.6 protein_coding 23 No 2108 NM_001407597
222 ENST00000493919.6 protein_coding 22 No 1948 NM_001408454,NM_001408457,NM_001408459,NM_001408460,NM_001408461,NM_001408464,NM_001408467,NM_001408496,NM_001408498,NM_001408511
218 ENST00000489037.2 protein_coding 22 No 455 NM_001407655,NM_001408411
216 ENST00000484087.6 protein_coding 21 No 1495 NM_001408425,NM_001408426,NM_001408427,NM_001408428,NM_001408429,NM_001408430,NM_001408432,NM_001408433,NM_001408434,NM_001408435,NM_001408436,NM_001408437,NM_001408438,NM_001408439,NM_001408440,NM_001408441,NM_001408442,NM_001408443,NM_001408444,NM_00140
221 ENST00000493795.5 CCDS11459 protein_coding 22 No 5732 NM_001407692,NM_001407698,NM_001407732,NM_001407736,NM_001407738,NM_001407742,NM_001407744,NM_001407747,NM_001407750,NM_001407845,NM_001407849,NM_001407852,NM_001407881,NM_001407898,NM_001407902,NM_001407924,NM_001407925,NM_001407928,NM_001407929,NM_00140
203 ENST00000357654.9 1 CCDS11453 Select protein_coding 23 Yes 7088 NM_001407598,NM_001407602,NM_001407603,NM_001407624,NM_001407626,NM_001407646,NM_001407652,NM_001407968,NM_001407969,NM_007294

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
C903* EX10 2822 c.2709T>A p.Cys903Ter stop_gained Pathogenic 2

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology - NM_007294.3: EX2 (90-98%)
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in BRCA1

ID Year Title Journal PMID Variants
347 2019 Genetic Disorders in Prenatal Onset Syndromic Short Stature ... J. Pediatr. 31630891 1

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