Information on POLD1
Basic details
Alt. symbols: POLD | CDC2
Approved name: DNA polymerase delta 1, catalytic subunit
Alt. names: polymerase (DNA directed), delta 1, catalytic subunit (125kD), polymerase (DNA) delta 1, catalytic subunit | CDC2 homolog (S. cerevisiae)
Location: 19q13.33: 50384204 - 50418018 (+)
Gene type: protein_coding, 16 transcripts.
Scores: LoFtool: 0.656000 | pLI: 0.00180701 | LOEUF: 0.527
Normal function
POLD1 encodes the catalytic component of the trimeric (Pol-delta3 complex) and tetrameric DNA polymerase delta complexes (Pol-delta4 complex). As part of these complexes, the protein plays a crucial role in high fidelity genome replication, including in lagging strand synthesis, and repair. Exhibits both DNA polymerase and 3'- to 5'-exonuclease activities (PMID:16510448, PMID:19074196, PMID:20334433, PMID:24035200, PMID:24022480). Requires the presence of accessory proteins POLD2, POLD3 and POLD4 for full activity. Depending upon the absence (Pol-delta3) or the presence of POLD4 (Pol-delta4), displays differences in catalytic activity. Most notably, expresses higher proofreading activity in the context of Pol-delta3 compared with that of Pol-delta4 (PubMed:19074196, PubMed:20334433). Although both Pol-delta3 and Pol-delta4 process Okazaki fragments in vitro, Pol-delta3 may be better suited to fulfill this task, exhibiting near-absence of strand displacement activity compared to Pol-delta4 and stalling on encounter with the 5'-blocking oligonucleotides. Pol-delta3 idling process may avoid the formation of a gap, while maintaining a nick that can be readily ligated (PubMed:24035200). Along with DNA polymerase kappa, DNA polymerase delta carries out approximately half of nucleotide excision repair (NER) synthesis following UV irradiation (PubMed:20227374). Under conditions of DNA replication stress, in the presence of POLD3 and POLD4, may catalyze the repair of broken replication forks through break-induced replication (BIR) (PubMed:24310611). Involved in the translesion synthesis (TLS) of templates carrying O6-methylguanine or abasic sites (PubMed:19074196). DPOD1_HUMAN,P28340
Dysfunction and disease
Genetic Variants in POLD1 have been associated wiht Mandibular hypoplasia, deafness, progeroid features, and lipodystrophy syndrome [MIM:615381] | {Colorectal cancer, susceptibility to, 10} [MIM:612591]. More recently a homozigous missense mutation (c. 3178C>T; p.R1060C) in POLD1 has been identified in 3 related subjects who presented with recurrent, especially herpetic, infections and T-cell lymphopenia with impaired T-cell but not B-cell proliferation [PMID: 31629014]. [Load More]
[Reviewed by Michele Proietti on 2020-07-16 13:16:08]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of POLD1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
212 | ENST00000601098.6 | CCDS12795 | protein_coding | 28 | No | 3524 | XM_011527038 | ||
209 | ENST00000599857.7 | CCDS12795 | protein_coding | 27 | No | 3467 | NM_001256849 | ||
201 | ENST00000440232.7 | 1 | CCDS12795 | Select | protein_coding | 27 | Yes | 3436 | NM_002691 |
205 | ENST00000595904.6 | CCDS82381 | protein_coding | 27 | No | 3514 | NM_001308632 | ||
213 | ENST00000613923.6 | protein_coding | 27 | No | 3341 | XM_005259008 | |||
216 | ENST00000687454.1 | CCDS12795 | protein_coding | 27 | No | XM_054321232 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in POLD1
ID | Year | Title | Journal | PMID | Variants |
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