Information on POMP
Basic details
Alt. symbols: C13orf12 | HSPC014 | UMP1
Approved name: proteasome maturation protein
Alt. names: chromosome 13 open reading frame 12 | proteassemblin
Location: 13q12.3: 28659065 - 28678959 (+)
Gene type: protein_coding, 12 transcripts.
Scores: LoFtool: | pLI: 0.86142306 | LOEUF: 0.387
Normal function
Proteasomes are multiprotein complexes with ATP-dependent proteolytic activities essential for intracellular clearance of K48 ubiquitin-tagged peptides and antigen processing to generate class I binding peptides. Proteasome maturation protein (POMP) serves as a chaperone for proteasome assembly, mediating 20S pre-proteasome association with the endoplasmic reticulum (ER) (PMID: 17948026). It is then degraded by the same proteasome upon completion of maturation. It mediates assembly. Immune cells contain a specialized immunoproteasome (i20S) that selectively incorporates specialized β1i (PSMB9/LMP2), β2i (PSMB10/LMP-10/MECL-1), and β5i (PSMB8/LMP7) catalytic subunits. During an immunological challenge, non-immune cells are stimulated by immune response products (IFN-γ or TNF-α), to upregulate i20S and enhance antigen presentation via class I major histocompatibility complex (MHC-I) molecules, allowing for the generation of an appropriate specific T cell response with subsequent T cell expansion and survival. POMP is upregulated by IFNs to enhance LMP7/PSMB8 catalytic subunit incorporation and accelerate i20S assembly (PMID: 29805043).
Dysfunction and disease
De novo heterozygous frameshift mutations in POMP escape nonsense-mediated decay (NMD) and result in dominant negative truncation mutants that cause POMP-related autoinflammation and immune dysregulation disease (PRAID) [OMIM: 618048, PRAAS2], characterized by severe neonatal-onset neutrophilic dermatosis, susceptibility to infections and autoimmunity. In contrast, a homozygous single base pair deletion in the 5′ untranslated region (UTR) of an alternative POMP transcript engenders a longe r-lived transcript that leads to an AR keratinization disorder of the skin with no inflammatory component called KLICK (keratosis linearis with ichthyosis congenita and sclerosing keratoderma) syndrome [OMIM: 601952] (PMID: 20226437). [Load More]
[Reviewed by Xiao P. Peng on 2022-06-22 05:57:25]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of POMP
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000380842.5 | CCDS9331 | Select | protein_coding | 6 | Yes | 1338 | NM_015932 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in POMP
ID | Year | Title | Journal | PMID | Variants |
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