Information on PRF1

Basic details

Alt. symbols: PFP | P1 | HPLH2

Approved name: perforin 1
Alt. names: perforin 1 (pore forming protein) | Perforin, perforin 1 (preforming protein)

Location: 10q22.1: 70597348 - 70602759 (-)
Gene type: protein_coding, 4 transcripts.

Scores: LoFtool: 0.035100 | pLI: 0.00000014 | LOEUF: 1.189

HGNC: 9360

NCBI: 5551, RefSeq: NG_009615.1

Ensembl: ENSG00000180644.8

LRG_94 | Status: public

OMIM: 170280

Expression | ProteinAtlas

Normal function

The PRF1 gene encodes the protein perforin. This protein is found in lymphocytes, particularly in T cells and natural killer cells. As a major component of the cytolytic granules, perforin is involved in the process of cytolysis and the regulation of the immune system response. Perforin helps create a channel through the plasma membrane, allowing cytolytic proteins to enter the target cell and trigger it to self-destruct. This cytolytic mechanism also helps regulate the immune system by destroying unneeded T cells. Controlling the number of T cells prevents the overproduction of cytokines that lead to inflammation and which, in excess, cause tissue damage.

Dysfunction and disease

More than 90 PRF1 gene mutations have been reported to cause autosomal recessive familial hemophagocytic lymphohistiocytosis (FHL) type 2 (FHL2) [MIM:603553]. These mutations result in the production of a defective perforin protein or prevent the production of perforin. The resulting shortage of functional perforin prevents it from carrying out its role in cell destruction and immune system regulation, leading to the exaggerated immune response characteristic of FHL. Mono-allelic mutations in PR F1 have also been reported to cause aplastic anemia (PMID: 17311987). In addition, people with PRF1 mutations are at increased risk of developing blood cancers, such as non-Hodgkin lymphoma or leukemia. Some of these individuals also have FHL2. These mutations impair the immune system's ability to destroy abnormal cells, allowing them to grow and divide in an uncontrolled way and leading to the development of cancer. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-06-10 09:19:14]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
FHL2 Hemophagocytic lymphohistiocytosis, familial, 2 ARdict. icon 603553www icon 0 (0 fams)
3727 Lymphoma, non-Hodgkin ARdict. icon 605027www icon 0 (0 fams)
3728 Aplastic anemia, adult-onset ARdict. icon 609135www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of PRF1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000441259.2 1 CCDS7305 Select protein_coding 3 Yes 2500 NM_001083116,NM_005041

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2008Uniparental disomy18799942
-Cryptic splicing-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in PRF1

ID Year Title Journal PMID Variants

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