Information on PTEN

Basic details

Alt. symbols: BZS | MHAM | MMAC1 | TEP1 | PTEN1

Approved name: phosphatase and tensin homolog
Alt. names: mutated in multiple advanced cancers 1

Location: 10q23.31: 87862638 - 87971930 (+)
Gene type: protein_coding, 22 transcripts.

Scores: LoFtool: 0.092900 | pLI: 0.97550687 | LOEUF: 0.507

HGNC: 9588

NCBI: 5728, RefSeq: NG_007466.2

Ensembl: ENSG00000171862.16

LRG_311 | Status: public

OMIM: 601728

Expression | ProteinAtlas

Normal function

PTEN encodes a PIP3 phosphatase that counteracts PI3K activity by converting PIP3 to PIP2 to regulate the amplitude and duration of signaling. Thus, PTEN is a tumor suppressor whose LOF results in inappropriate AKT/mTOR signaling, which promotes cell survival, proliferation, and motility. This leads to autosomal dominant disorders characterized by various skin and soft tissue overgrowth findings, including multiple benign tumors such as hamartomas, as well as increased risk for certain malignancies.

Dysfunction and disease

Monoallelic mutations in PTEN have been associated with the PTEN hamartoma tumor syndrome spectrum of disorders that encompass Cowden syndrome [OMIM: 158350], Bannayan-Riley-Ruvalcaba syndrome, PTEN-related Proteus syndrome, and Proteus-like syndrome. Though immunodeficiency had been previously reported for these syndromes, its nature remained largely uncharacterized until Browning et al. (2015), who described antibody deficiency for the first time in a patient with Cowden syndrome - this patien t had recurrent infections, panhypogammaglobulinaemia and a prematurely rapid decline in vaccine titers (PMID: 26246517). Another patient showed CD4+ T cell lymphopenia but with normal antibody production, suggesting that PTEN LOF could lead to both T- and/or B-cell defects. Shortly thereafter, Driessen et al. (2016) reported the identification of three more CVID patients carrying PTEN mutations, who showed expanded transitional B cell and reduced memory B cell proportions and abnormalities in both CSR and SHM, which they attributed to the deregulating effect of Akt signaling on AICDA expression and function (PMID: 27531073). Tsujita et al. (2016) also reported heterozygous PTEN nonsense and frameshift mutations that reduced but did not abolish PTEN mRNA and protein expression in 2 patients with APDS-like phenotypes featuring opportunistic infections and lymphadenopathy, where at least 1 carried a CVID diagnosis (PMID: 27426521). Lymphocytes from these patients showed AKT, mTOR, and S6 hyperphosphorylation, in keeping with PTEN’s known role in suppressing PI3K pathway activation. Like the Driessen patients, the latter showed significantly reduced memory and switched memory B cell counts despite normal B- and T-cell counts. But unlike the Driessen patients or patients with PIK3CD mutations, percentages of Tfh and transitional B cells were not significantly expanded. [Load More]

[Reviewed by Xiao P. Peng on 2022-07-08 22:34:03]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CWS1 Cowden syndrome 1 ADdict. icon 158350www icon 0 (0 fams)
PTEND PTEN deficiency ADdict. icon Loss of Function - 0 (0 fams)
3752 Glioma susceptibility 2 ADdict. icon 613028www icon 0 (0 fams)
3753 Meningioma, familial B ADdict. icon 607174www icon 0 (0 fams)
3754 Macrocephaly/autism syndrome ADdict. icon 605309www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of PTEN

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000371953.8 1 CCDS31238 Select protein_coding 9 Yes 8515 NM_000314
211 ENST00000693560.1 protein_coding No NM_001304717
212 ENST00000700021.1 protein_coding No NM_001304718

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology - NM_000314.4: EX9 (>98%)
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in PTEN

ID Year Title Journal PMID Variants

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