Information on RIPK1
Basic details
Alt. symbols: RIP
Approved name: receptor interacting serine/threonine kinase 1
Alt. names: receptor (TNFRSF)-interacting serine-threonine kinase 1 | receptor-interacting protein kinase 1
Location: 6p25.2: 3063824 - 3115187 (+)
Gene type: protein_coding, 19 transcripts.
Scores: LoFtool: 0.387000 | pLI: 0.41817740 | LOEUF: 0.554
Normal function
RIPK1 encodes a a serine-threonine kinase that acts as an important regulator of TNF-induced activation of canonical NF-κB signaling and cell death. RIPK1 function is regulated by changes in post-translational modifications, including phosphorylation, ubiquitination and caspase 8-mediated cleavage. It interacts with other cellular RHIM-containing adapters to initiate gene activation and cell death (PMID: 15258597) and forms a necrosis-inducing complex with RIPK3 (PMID: 19524513, 19524512). TNFR1 activation by TNF-alpha family cytokines leads to TRADD and TRAF2 recruitment and Lys-63 ubiquitination by TRAF2 acts as a critical enhancer of communication with downstream MAPK and NF-kappa-B signal transducers, which in turn mediate activation of pro-inflammatory genes (PMID: 11101870, 15258597, 17389591, 19524512, 119524513). Disrupted TNF-mediated RIPK1 ubiquitination induces activation of cell death via apoptosis or necroptosis.
Dysfunction and disease
Both mono- and bi-allelic variants in RIPK1 are associated with inborn errors of immunity (IEIs). Dominant pathogenic variants that block Caspase-8-mediated RIPK1 cleavage lead to its over-activation, and the promotion of RDA and necroptosis, associated with CRIA, a predominantly autoinflammatory disease featuring recurrent fevers and intermittent lymphadenopathy (PMID: 31827281, 31827280). Recessive RIPK1 deficiency due to pathogenic LOF variants leads to reduced NF-kB activation and dysregulat ed cell death under specific stimulatory conditions. These patients present with variable immunodeficiency, gastrointestinal (GI) issues, and arthritis (PMID: 30026316, 30591564, 31213653). Rarely, neurodevelopmental issues have been reported in addition to the features described above (PMID: 31213653). Most recently, compound heterozygous missense variants leading to an autosomal recessive gain-of-function mechanism were reported in patients with autoinflammatory features (recurrent fevers, lymphadenopathy and skin rash) driven by RIPK1 activation-induced T cell death (https://doi.org/10.1101/2024.03.28.24304774). [Load More]
[Reviewed by Xiao P. Peng on 2024-07-24 20:00:35]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of RIPK1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
202 | ENST00000380409.3 | protein_coding | 10 | No | 3947 | NM_001317061,NM_001354931,NM_001354932,NM_001354933,NM_001354934 | |||
205 | ENST00000676618.1 | nonsense_mediated_decay | No | 1442 | XM_006715237 | ||||
208 | ENST00000676995.1 | processed_transcript | No | XM_017011405 | |||||
201 | ENST00000259808.9 | CCDS4482 | Select | protein_coding | 11 | Yes | 4092 | NM_001354930,NM_003804 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in RIPK1
ID | Year | Title | Journal | PMID | Variants |
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