Information on C3

Basic details

Alt. symbols: CPAMD1 | ARMD9 | C3a | C3b

Approved name: complement C3
Alt. names: complement component 3 | C3a anaphylatoxin, complement component C3a, complement component C3b, prepro-C3

Location: 19p13.3: 6677704 - 6730562 (-)
Gene type: protein_coding, 28 transcripts.

Scores: LoFtool: 0.335000 | pLI: 0.99959015 | LOEUF: 0.305

HGNC: 1318

NCBI: 718, RefSeq: NG_009557.1

Ensembl: ENSG00000125730.18

LRG_27 | Status: public

OMIM: 120700

Expression | ProteinAtlas

Normal function

The C3 gene encodes the complement component 3 (or C3). This protein plays a key role in the complement system. The complement system is a group of proteins that work together to destroy pathogens, trigger inflammation, and remove debris from cells and tissues. The C3 protein is essential for activating the complement system. The presence of foreign invaders triggers the C3 protein to be cleaved into two smaller pieces. One of these pieces, called C3b, interacts with several other proteins on the surface of cells to trigger the complement systemís response. This process must be carefully regulated so the complement system targets only unwanted materials and does not damage the bodyís healthy cells. Two major forms (or allotypes) of the C3 protein, known as C3S and C3F have been identified. In the general population, C3S is more common than C3F. The two allotypes differ by a single amino acid, although it is unclear whether they function differently.

Dysfunction and disease

Mutations in C3 have been associated with various conditions, including C3 immune deficiency, C3 glorumelopathy, atypical hemolytic-uremic syndrome (aHUS) and age-related macular degeneration [MIM:611378]. At least 17 loss-of-function mutations have been described to cause C3 immune deficiency [MIM:613779], a rare autosomal recessive condition characterized by recurrent bacterial infections beginning in childhood. At least one gain-of-function mutation in C3 has been associated with a rare form of kidney disease called C3 glomerulopathy. This disorder damages the kidneys and can lead to end-stage renal disease (ESRD), a life-threatening condition that prevents the kidneys from filtering fluids and waste products from the body effectively. This mutation overactivates the complement system, which then causes damage to the glomeruli in the kidneys. Other variants in C3 do not cause C3 glomerulopathy directly, but appear to increase the likelihood of developing the disorder. In particular, the C3F allotype is seen more frequently in people with this condition than in the general population (C3S allotype). Monoallelic -mostly hypomorphic missense - variants in C3 have also been associated with increased susceptibility to the development of aHUS [MIM:612925]. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-04-27 15:35:48]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
C3D Complement component 3 deficiency ARdict. icon Loss of Function 613779www icon 0 (0 fams)
aHUS5 Hemolytic uremic syndrome, atypical, susceptibility to, 5 ADdict. icon Gain of Function 612925www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of C3

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000245907.11 1 CCDS32883 Select protein_coding 41 Yes 5231 NM_000064

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
K155Q EX4 524 c.463A>C p.Lys155Gln missense_variant Risk allele 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in C3

ID Year Title Journal PMID Variants
414 2013 Rare variants in CFI, C3 and C9 are associated with high ris... Nat. Genet. 24036952 1
461 2013 A rare nonsynonymous sequence variant in C3 is associated wi... Nat. Genet. 24036950 1
462 2013 Identification of a rare coding variant in complement 3 asso... Nat. Genet. 24036949 1
463 2016 Genetic variations in complement factors in patients with co... Int. J. Hematol. 26830967 1

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