Information on C6

Basic details

Alt. symbols:

Approved name: complement C6
Alt. names: complement component 6

Location: 5p13.1: 41142116 - 41261438 (-)
Gene type: protein_coding, 11 transcripts.

Scores: LoFtool: 0.273000 | pLI: 0.00000000 | LOEUF: 0.993

HGNC: 1339

NCBI: 729, RefSeq: NG_011582.1

Ensembl: ENSG00000039537.16

LRG_29 | Status: public

OMIM: 217050

Expression | ProteinAtlas

Normal function

The C6 gene encodes a serum glycoprotein (C6) that forms a membrane attack complex (MAC) together with complement components C5b, C7, C8, and C9 as part of the terminal complement pathway of the innate immune system. The MAC perforates cell membranes, forming transmembrane channels in order to facilitate cell lysis.

Dysfunction and disease

Biallelic mutations in C6 may cause complement C6 deficiency (C6D) [MIM:612446] or combined C6/C7 deficiency, a rare disease associated with susceptibility to severe recurrent infections, predominantly by Neisseria species. Of note, homozygous C6D has been rarely observed in Caucasians but has been reported at higher prevalence among African-Americans living in the Southeastern United States (PMID: 10632667). There have been at least 3 reports of patients with C6D presenting with SLE-like phenot ypes. Though there has been a long-standing link between monogenic lupus and early classical complement components, this has been reported since the 1980s for terminal complement components as well. Zeitz et al. (1981) noted systemic lupus erythematosus (SLE) or an SLE-like syndrome in 7% of individuals with hereditary C5, C7, C8, or C9 deficiency (PMID: 7470173). Tedesco et al. (1981) reported complete C6D in association with an SLE-like illness (PMID: 7317125) and Trapp et al. (1987) described discoid lupus, Sjogren’s and hyperthyroidism in another complete C6D patient (PMID: 3430506). Wisniewski et al. (1985) reported a third complete C6D patient presenting with a systemic rheumatic illness characterized by fever, anemia, lymphadenopathy, hepatosplenomegaly, episcleritis, and asymmetric arthritis who was found to have developed anti-C6 antibodies (PMID: 3931570). Dragon-Durey et al. (2003) identified complete C6D in 7 unrelated individuals of North or Central Africa descent living in France, of whom 4 presented with Neisseria meningitidis infections, 1 with focal and segmental glomerulosclerosis with hyalinosis, 1 with SLE and 1 with Still's disease (PMID: 12653841). Kallel-Sellami et al. (2007) reported combined homozygous C2 and C6 deficiency in a discoid lupus patient (PMID: 17893986). Most recently, in their large cohort of patients with various complement deficiencies, El-Sissy et al. (2019) found that 10 of 50 patients with C6D had some form of autoimmune disease (PMID: 31440263). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2022-05-11 08:17:26]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
C6D Complement component 6 deficiency ARdict. icon 612446www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of C6

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000263413.7 CCDS3936 protein_coding 18 No 3661 NM_001115131
202 ENST00000337836.10 1 CCDS3936 Select protein_coding 18 Yes 3691 NM_000065

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
EX16+2T>C IN16 c.2381+2T>C splice_donor_variant Likely Pathogenic 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in C6

ID Year Title Journal PMID Variants
119 1996 Molecular bases of combined subtotal deficiencies of C6 and ... jimmunol 8871666 1
123 1995 Molecular basis of subtotal complement C6 deficiency. A carb... J. Clin. Investig. 7535801 1
590 2014 Compound heterozygous mutations in the C6 gene of a child wi... Mol. Immunol. 24378253 1

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