Information on RNASEH2A

Basic details

Alt. symbols: RNASEHI | RNHIA | RNHL | AGS4

Approved name: ribonuclease H2 subunit A
Alt. names: ribonuclease H2, large subunit, Aicardi-Goutieres syndrome 4, ribonuclease H2, subunit A

Location: 19p13.13: 12806584 - 12813640 (+)
Gene type: protein_coding, 6 transcripts.

Scores: LoFtool: 0.254000 | pLI: 0.05007913 | LOEUF: 0.880

HGNC: 18518

NCBI: 10535, RefSeq: NG_012662.1

Ensembl: ENSG00000104889.7

LRG_278 | Status: public

OMIM: 606034

Expression | ProteinAtlas

Normal function

The RNASEH2A gene encodes a subunit of the RNase H2 complex. This complex is a ribonuclease, that is, an enzyme that helps break down RNA molecules. In particular, the RNase H2 complex normally helps break down RNA-DNA hybrid molecules (one strand of RNA is combined with one strand of DNA) when these are no longer needed. RNA-DNA hybrids are formed in all cells during DNA replication. The RNase H2 complex is also thought to be involved in error repair, and other cellular processes, including helping to prevent inappropriate immune system activation.

Dysfunction and disease

Biallelic mutations in RNASEH2A cause Aicardi-Goutieres syndrome 4 (AGS4) [MIM:610333]. AGS is an autosomal recessive and genetically heterogeneous encephalopathy characterized in its most severe form by cerebral atrophy, leukodystrophy, intracranial calcifications, chronic cerebrospinal fluid (CSF) lymphocytosis, increased CSF alpha-interferon (IFNA1), and negative serologic investigations for common prenatal infections (Ali et al., 2006). AGS is phenotypically similar to in utero viral infecti on. Severe neurologic dysfunction becomes clinically apparent in infancy, and manifests as progressive microcephaly, spasticity, dystonic posturing, profound psychomotor retardation, and often death in early childhood. Outside the nervous system, thrombocytopenia, hepatosplenomegaly, and elevated hepatic transaminases along with intermittent fever may also erroneously suggest an infective process. More than 40 pathogenic mutations in the RNASEH2A gene have been identified in people with AGS. RNASEH2A mutations lead to a dysfunctional RNase H2 complex, which may disrupt transcription, DNA replication, DNA repair, apoptosis, or other processes. Such disruptions are thought to lead to the accumulation of unneeded DNA and RNA in cells. These DNA and RNA fragments may be mistaken for the genetic material of viral invaders, triggering immune system reactions in multiple body systems that cause encephalopathy, skin lesions and the other clinical manifestations characteristic of AGS. [Load More]

[Reviewed by Andrés Caballero-Oteyza on ]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
AGS4 Aicardi-Goutieres syndrome 4 ARdict. icon 610333www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of RNASEH2A

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000221486.6 1 CCDS12282 Select protein_coding 8 Yes 1164 NM_006397

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in RNASEH2A

ID Year Title Journal PMID Variants

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