Information on RPSA

Basic details

Alt. symbols: LAMR1 | LRP | 37LRP | p40 | SA

Approved name: ribosomal protein SA
Alt. names: laminin receptor 1 (67kD, ribosomal protein SA)

Location: 3p22.1: 39406716 - 39426255 (+)
Gene type: protein_coding, 20 transcripts.

Scores: LoFtool: | pLI: 0.75185143 | LOEUF: 0.368

HGNC: 6502

NCBI: 3921, RefSeq: NG_033234.1

Ensembl: ENSG00000168028.15

LRG_735 | Status: public

OMIM: 150370

Expression | ProteinAtlas

Normal function

The RPSA gene encodes a protein called ribosomal protein SA (RPSA), which plays a crucial role in the functioning of ribosomes. Ribosomes are essential cellular structures responsible for protein synthesis, where they turn genetic information into functional proteins. RPSA is one of the approximately 80 different ribosomal proteins that conform the small subunit of ribosomes. The small subunit is responsible for recognizing and binding to the messenger RNA (mRNA) molecule. This binding initiates the process of protein synthesis. The exact function of RPSA within the ribosome is not fully understood, but research suggests that it may have a regulatory role by controlling the translation of specific mRNAs, thus influencing the synthesis of certain proteins. These proteins are likely to be important for various developmental processes that occur before birth. Generally, ribosomal proteins, including RPSA, are involved in the assembly and stability of ribosomes by helping with the proper folding and positioning of the ribosomal RNA (rRNA) molecules. Furthermore, ribosomal proteins, have been found to play roles in cellular growth, proliferation, and differentiation.

Dysfunction and disease

Monoallelic missense and truncating (nonsense, frameshift) mutations in the RPSA gene have been reported in individuals with isolated congenital asplenia. People with this condition lack a spleen - and are thus highly susceptible to life-threatening infections - and suffer from other developmental abnormalities. As of the time of writing, there are 6 pathogenic and 1 likely pathogenic variants in ClinVar (Q9X, T54N, L58F, R180W/G, R186C and P199fs). RPSA gene mutations are thought to reduce the amount of functional ribosomal protein SA. A shortage of the normal protein likely impairs the assembly of ribosomes, but the specific effects of the mutations are not known. It is unclear why RPSA gene mutations mainly affect the development of the spleen. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2023-07-27 10:49:49]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
ICAS Asplenia, isolated congenital ADdict. icon 271400www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of RPSA

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000443003.2 CCDS77723 protein_coding 7 No 1032 NM_001304288
201 ENST00000301821.11 1 CCDS2686 Select protein_coding 7 Yes 1140 NM_002295

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in RPSA

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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