Information on CARMIL2
Basic details
Alt. symbols: RLTPR | LRRC16C
Approved name: capping protein regulator and myosin 1 linker 2
Alt. names: RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing | RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein, leucine rich repeat containing 16C
Location: 16q22.1: 67644988 - 67657569 (+)
Gene type: protein_coding, 16 transcripts.
Scores: LoFtool: 0.772000 | pLI: 0.02235331 | LOEUF: 0.552
Normal function
CARMIL2 (alias RLTPR) encodes a member of the CARMIL (capping protein, Arp2/3, myosin-I linker) family of proteins. This cell membrane-cytoskeleton-associated protein plays a role in the regulation of actin polymerization at the barbed end of actin filaments, preventing F-actin heterodimeric capping protein (CP) activity at the leading edges of migrating cells, and thus generating uncapped barbed ends to enhance actin polymerization (PMID: 26466680). It has also been reported to play roles in cell polarity, lamellipodial assembly, membrane ruffling and macropinosome formations to enable cell migration and invadopodia formation during wound healing (PMID: 19846667, 26578515, 26466680). It is required for CD28-mediated co-stimulation of NF-kappa-B signaling in naive T cells for their activation, maturation into T memory cells, and differentiation into T helper and T regulatory cells (PMID: 27647349, 27647348, 28112205).
Dysfunction and disease
Biallelic frameshift, nonsense, missense and splice site variants in CARMIL2 are associated with Immunodeficiency 58 [MIM:618131], an autosomal recessive combined immunodeficiency characterized by early-onset skin lesions – ranging from atopic and seborrheic dermatitis to psoriasiform rash, various atopies, early onset inflammatory bowel disease, eosinophilic esophagitis, or autoimmune endocrinopathy (PMID: 27896283, 29479355, 31079270, 31115454, 33723309), as well as EBV+ leimyomata (smooth mus cle tumors) (PMID: 27896283, 28112205, 28223207, 32625199). Recurrent infections include skin abscesses, warts, Molluscum contagiosum, recurrent respiratory infections, and chronic persistent infections with Candida, mycobacteria, EBV, bacteria, and viruses (PMID: 27647349, 27896283, 29479355, 34287962). Immunophenotyping is notable for defective T-cell function with reduced memory CD4+ T cells, Treg, and cTFH cell levels, as well as reduced memory B and NK cells and defective CD4+ and CD8+ T cell responses to CD3/CD28 co-stimulation (PMID: 27647349, 29479355, 34287962). [Load More]
[Reviewed by Xiao P. Peng on 2022-07-08 05:25:53]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.
Transcripts of CARMIL2
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
202 | ENST00000545661.5 | CCDS81998 | protein_coding | 38 | No | 4119 | NM_001317026 | ||
201 | ENST00000334583.11 | CCDS45513 | Select | protein_coding | 38 | Yes | 4462 | NM_001013838 | |
ENST00000696175.1 | protein_coding | 39 | No | XM_011522875 | |||||
ENST00000696176.1 | protein_coding | 39 | No | XM_017022953 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in CARMIL2
ID | Year | Title | Journal | PMID | Variants |
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