Information on RTEL1

Basic details

Alt. symbols: C20orf41 | bK3184A7.3 | NHL | DKFZP434C013 | KIAA1088 | RTEL

Approved name: regulator of telomere elongation helicase 1
Alt. names: chromosome 20 open reading frame 41

Location: 20q13.33: 63657810 - 63696253 (+)
Gene type: protein_coding, 21 transcripts.

Scores: LoFtool: 0.051700 | pLI: 0.77775848 | LOEUF: 0.537

HGNC: 15888

NCBI: 51750, RefSeq: NG_033901.1

Ensembl: ENSG00000258366.12

LRG_1149 | Status: public

OMIM: 608833

Expression | ProteinAtlas

Normal function

RTEL1 encodes a DNA helicase which functions in the stability, protection and elongation of telomeres and interacts with proteins in the shelterin complex known to protect telomeres during DNA replication. Read-through transcription of this gene into the neighboring downstream gene, which encodes tumor necrosis factor receptor superfamily, member 6b, generates a non-coding transcript.

Dysfunction and disease

Bi-allelic mutations in RTEL1 cause autosomal recessive dyskeratosis congenita, type 5 [MIM:615190] and myelodysplastic syndrome. In addition, heterozygous mutations in RTEL1, have also been associated with autosomal dominant dyskeratosis congenita, type 4 [MIM:615190]. Patients with mono- or bi-allelic mutations in RTEL1 may also be diagnosed with Hoyeraal-Hreidarsson syndrome (HHS). Bi-allelic mutations were first reported by Walne et al. (2013) in 10 patients from 7 families with severe dyske ratosis congenita (PMID:23453664). The authors identified a total of 11 different mutations. Le Guen et al. (2013) (PMID:23591994) and Ballew et al. (2013) (PMID:23329068) reported patients with HHS and bi-allelic mutations. Ballew et al. (2013) were also the first to report mono-allelic mutations leading to HHS and dyskeratosis congenita. For instance, they identified the E615D mutation in homozygosity in an index patient with HHS and in heterozygosity in his unaffected mother and brother. Both heterozygous carriers had shortened telomeres. The brother also had hypocellular bone marrow and was being followed for development of DKC. Moreover, as observed for other telomere-related genes, mono-allelic mutations in RTEL1 have also been associated with telomere-related pulmonary fibrosis and/or bone marrow failure, type 3 [MIM:616373]. Lamm et al. (2009) and Deng et al. (2013) reported that an individual, who was a relative of a patient with biallelic RTEL1 mutations, was found to carry a heterozygous mutation (M492I) and had died of pulmonary fibrosis at age 58 years. A couple of years later, Stuart et al. (2105) and Cogan et al. (2015) reported a total of 14 different mutations in 14 unrelated families with telomere-related pulmonary fibrosis without bone marrow failure. According to ClinVar, UniProt and VarSome there are more than 90 pathogenic or likely pathogenic variants known today, including frameshift (21), missense (28), nonsense (26), splice-site (20), and UTR (9) mutations. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-05-03 15:22:13]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
DKCB5 Autosomal recessive dyskeratosis congenita-5 ARdict. icon 615190www icon 0 (0 fams)
DKCA4 Autosomal dominant dyskeratosis congenita-4 ADdict. icon 615190www icon 0 (0 fams)
PFBMFT3 Telomere-related pulmonary fibrosis and/or bone marrow failure-3 ADdict. icon 616373www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of RTEL1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
203 ENST00000360203.11 2 CCDS63331 Select protein_coding 35 Yes 4615 NM_001283009
201 ENST00000318100.9 CCDS74751 protein_coding 34 No 4162 NM_001283010
205 ENST00000370018.7 3 CCDS13531 protein_coding 35 No 4955 NM_016434
212 ENST00000508582.7 1 CCDS13530 protein_coding 35 No 4273 NM_032957

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
R754Q EX25 2586 c.2261G>A p.Arg754Gln missense_variant Uncertain significance 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in RTEL1

ID Year Title Journal PMID Variants
489 2019 Impaired cytomegalovirus immunity in idiopathic pulmonary fi... Am. J. Respir. 30088779 1

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