Information on CASP10

Basic details

Alt. symbols: MCH4 | FLICE-2

Approved name: caspase 10
Alt. names: caspase 10, apoptosis-related cysteine protease, caspase 10, apoptosis-related cysteine peptidase | FAS-associated death domain protein interleukin-1B-converting enzyme 2

Location: 2q33.1: 201182872 - 201229428 (+)
Gene type: protein_coding, 15 transcripts.

Scores: LoFtool: 0.454000 | pLI: 0.00000000 | LOEUF: 1.287

HGNC: 1500

NCBI: 843, RefSeq: NG_007265.1

Ensembl: ENSG00000003400.16

LRG_33 | Status: public

OMIM: 601762

Expression | ProteinAtlas

Normal function

The CASP10 gene comprises 11 exons and encodes caspase-10, a member of the cysteine-aspartic acid protease (caspase) family. Sequential activation of caspases plays a central role in the execution-phase of cell apoptosis. Caspases exist as inactive proenzymes that undergo proteolytic processing at conserved Asp residues to produce two subunits, large and small, that dimerize to form the active enzyme. The two primary isoforms are expressed equally. CASP10L contains an additional 43 amino acids at the end of the prodomain, but shares the same C terminus as the CASP10S isoform. The precise function of caspase-10 still remains poorly understood, though it is known that caspase-10 is recruited to both Fas- and TNFR-1 receptors in a FADD dependent manner. It is processed by caspase 8 cleavage and then goes on to cleave and activate caspases 3 and 7.

Dysfunction and disease

Somatic frameshift, nonsense and missense CASP10 mutations have been identified in patients with non-Hodgkin lymphoma [MIM:605027] and gastric cancer [MIM:613659], while germline mutations in CASP10 have been associated with type IIA autoimmune lymphoproliferative syndrome (ALPS2A) [MIM:603909]. This is thought to account for ~3-6% of all primary ALPS, with fewer than 20 patients reported in the literature thus far. Like other classic ALPS patients, most patients have early childhood onset of no n-malignant lymphadenopathy with hepatosplenomegaly, and autoimmune hemolytic anemia, thrombocytopenia and neutropenia. Because of the condition's rarity, definitive correlations with genotypes or with elevation of the same biomarkers used for ALPS-FAS are lacking. Currently, few pathogenic or likely pathogenic germline CASP10 variants have been reported in the literature or found in ClinVar and even those reported remain controversial in terms of pathogenicity. At least ten variants, of which seven are missense (K99E, I406L, L285F, V410l, Y446C, P501L, L522l), have been identified in individuals with ALPS thus far (PMID: 10412980, 16446975, 27799292, 31309545). Additionally, at least one in/del resulting in a frameshift effect and a 13.4?kb intragenic CASP10 deletion have been reported, though the latter was found in a patient whose sJIA-like phenotype differed significantly from classical ALPS (PMID: 21382177). Most of the missense variants continue to remain controversial, given the conflicting data provided. K99E was reported in one patient and considered likely benign (PMID: 32599613). Zhu et al. (2006) showed that the I406L variant resulted in defective T cell apoptosis in vitro, double-negative T cell expansion, and positive direct antiglobulin IgG tests and antithyroid antibodies – findings present even in the asymptomatic carrier relatives of their affected proband and suggesting the need for a distinction between cellular and clinical penetrance (PMID: 16446975). They further showed that both L285F and I406L exerted dominant-negative effects in co-transfection assays into the H9 lymphocytic cell line. However, the pathogenicity of the I406L variant has been questioned because of its high allele frequency amongst some subpopulations in the ExAC database (PMID: 27535533), leading to its reclassification as a Variant of Uncertain Significance by some databases such as OMIM. In contrast, the same authors showed that V410I and Y446C exerted no dominant negative effects and were found at relatively high population allele frequencies, including in homozygosity in healthy controls. However, others have shown experimentally that T446C can decrease CASP10 protein activity (Dianzani et al, 1997; Ramenghi et al, 2000; Campagnoli et al, 2006; Zhu et al, 2006). Similarly, L522I is also found at high population frequencies, but has been predicted to be damaging and has also been associated with impaired apoptotic capacity (Hu et al, 2008). Miano et al. (2019) found that patients harboring V410I, Y446C, and L522I showed impaired Fas-mediated apoptosis (PMID: 31309545). Both homozygosity and heterozygosity for Y446C, V410l, and c.1202_1208del, p.(Cys401Leufs*15) have been reported. However, Consonni et al. (2024) showed that even though the last variant led to total loss of and reductions in caspase-10 RNA and protein, respectively, FAS-mediated apoptosis remained comparable to healthy controls (PMID: 38704374). Moreover, the authors did not find an [Load More]

[Reviewed by Xiao P. Peng on 2024-08-05 13:46:43]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
ALPS2A Autoimmune lymphoproliferative syndrome, type IIA ADdict. icon 603909www icon 0 (0 fams)
SNHL Lymphoma, non-Hodgkin, somatic Sodict. icon 605027www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of CASP10

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
213 ENST00000492363.6 processed_transcript No NM_032976
206 ENST00000374650.8 CCDS77506 protein_coding 6 No 1126 NM_001306083
203 ENST00000313728.12 CCDS56159 protein_coding 8 No 1521 NM_001206524
201 ENST00000272879.9 CCDS2338 protein_coding 10 No 2073 NM_032974
208 ENST00000448480.1 CCDS56160 protein_coding 8 No 1603 NM_001206542
202 ENST00000286186.11 1 CCDS2340 Select protein_coding 10 Yes 5668 NM_032977
204 ENST00000346817.10 CCDS2339 protein_coding 8 No 3926 NM_001230

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
I406L EX9 1391 c.1216A>T p.Ile406Leu missense_variant Likely Benign 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in CASP10

ID Year Title Journal PMID Variants
135 2006 Genetic alterations in caspase-10 may be causative or protec... Hum. Gen. 16446975 1

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