Information on SH3BP2

Basic details

Alt. symbols: RES4-23 | CRBM

Approved name: SH3 domain binding protein 2
Alt. names: Cherubism

Location: 4p16.3: 2793023 - 2841291 (+)
Gene type: protein_coding, 31 transcripts.

Scores: LoFtool: 0.037600 | pLI: 0.00310190 | LOEUF: 1.135

HGNC: 10825

NCBI: 6452, RefSeq: NG_011609.1

Ensembl: ENSG00000087266.18

LRG_1334 | Status: public

OMIM: 602104

Expression | ProteinAtlas

Normal function

The role of SH3BP2 is still unclear, although it has been suggested that it may be involved in the regulation and activation of signalling pathways in B cells, NK cells and macrophages, such as the BCR signalling pathway, the NK-cell-mediated cytotoxicity and the basophilic cell degranulation. SH3BP2 seems to interact with PLCG2, and it is supposedly an adaptor protein without catalytic activity. SH3BP2 is also involved in the production of osteoclasts, which are the cells that degrade bone tissue when it is no longer needed. Osteoclasts play a central role in bone remodelling.

Dysfunction and disease

Monoallelic mutations in SH3BP2 cause autosomal dominant cherubism [MIM:118400]. This is a disorder characterized by swelling of the lower face that begins around the third or fourth year of life and progresses until the late teens. Swelling is caused by excessive bone degradation of the upper and lower jaws and the development of fibrous tissue masses. Pathogenic missense mutations reported to date include p.Thr107Met, p.Arg415Gln/Pro, p.Pro418His/Arg/Leu/Thr, p.Gln419Gly/Asn and p.Gly420Glu/Ar g (Ueki et al. 2001; Lo et al. 2003; Li and Yu 2006; Lietman et al. 2006; de Lange et al. 2007; Carvalho et al. 2009). Moreover, Carvalho et al. reported in 2008 the frameshift mutation p.Arg49ArgfsX26 -occurring in the PH domain of the protein- in a patient with severe cherubism. The authors also reported a somatic mutation (p.Gln481Leu) in a patient with a giant cell granuloma. In addition, one patient with a mutation (p.Arg477Trp) in SH3BP2 was described in a cohort of patients with CVID (van Schouwenburg et al. 2015, PMID: 26122175) via application of whole genome and RNA sequencing. However, these mutations were not functionally tested. A combination of bone loss and inflammation -due to increased signalling- likely underlies the cyst-like growth characteristics of cherubism. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-06-12 14:14:51]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CHERUB Cherubism ADdict. icon 118400www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of SH3BP2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000435136.8 2 CCDS54715 protein_coding 13 No 9139 NM_001145855
220 ENST00000511747.6 CCDS54716 protein_coding 13 No 2351 NM_001145856
206 ENST00000503393.8 1 CCDS33944 Select protein_coding 13 Yes 9006 NM_001122681,NM_003023

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
R534W EX11 1639 c.1600C>T p.Arg534Trp missense_variant Likely Benign 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in SH3BP2

ID Year Title Journal PMID Variants
52 2015 Application of whole genome and RNA sequencing to investigat... Clin. Immunol. 26122175 1

Phenotypic & functional assays available?

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