Information on SH3KBP1

Basic details

Alt. symbols: CIN85

Approved name: SH3 domain containing kinase binding protein 1
Alt. names: SH3 domaincontaining kinasebinding protein 1 | CD2binding protein 3 | SH3domain kinase binding protein 1 | Src family kinasebinding protein 1 | cCblinteracting protein | cblinteracting protein of 85 kDa | human Src family kinasebinding protein 1 | migrationinducing gene 18 | srcrelated kinase binding protein1

Location: Xp22.12: 19533977 - 19887600 (-)
Gene type: protein_coding, 50 transcripts.

Scores: LoFtool: 0.309000 | pLI: 0.99864313 | LOEUF: 0.194

HGNC: 13867

NCBI: 30011, RefSeq: NG_021367.1

Ensembl: ENSG00000147010.19

LRG_ | Status: none

OMIM: 300374

Expression | ProteinAtlas

Normal function

SH3KBP1 encodes CIN85, an adapter protein involved in regulating diverse signal transduction pathways. It has been implicated in the regulation of endocytosis and lysosomal degradation of ligand-induced receptor tyrosine kinases, including EGFR and MET/hepatocyte growth factor receptor, through an association with ubiquitin ligase c-Cbl and endophilins (PMID: 12177062 , 15090612). It also promotes recycling of TGF-β receptors to the cell surface (PMID: 26169354) and regulates ligand-dependent endocytosis of the IgE receptor (PMID: 8382611). In B cells, CIN85 promotes Cbl-mediated regulation of BCR signaling (PMID: 22262777), including BCR-induced NF-κB activation in association with Syk substrate SLP65/BLNK (PMID: 21822214). This is achieved at least partly through effects on Ca2+ flux and diacylglycerol (DAG) production, which synergistically control the upstream NF-κB regulator PKC-β. In T cells, CIN85 is recruited to the TCR signaling complex after receptor ligation to negatively regulate T cell activation through its association with phosphatase Sts-2 (PMID: 30723173). In neutrophils, CIN85 translocates like c-Cbl from the cytosol to the plasma membrane upon receptor cross-linking (PMID: 21372129). The neutrophil FcγRIIa receptor plays a direct role in phagocytosis and CIN85 is thought to help attenuate its expression and function by c-Cbl-mediated proteasomal degradation in a PKC-dependent manner. In association with protein phosphatase 2A (PP2Ac), CIN85 has also been implicated in regulating integrin-dependent platelet function (PMID: 27334924). CIN85 is also thought to be involved in regulation of cell morphology, migration, and adhesion (PMID: 12771190, 17606992), as well as cellular stress responses via MAPK signaling (PMID: 16256071) and modulation of TNF-mediated apoptosis (PMID: 15707590).

Dysfunction and disease

Hemizygous SH3KBP1 mutation has been associated with an X-linked recessive primary immunodeficiency [OMIM: 300310] characterized by onset of recurrent infections in early childhood due to impaired antibody production. Keller et al. (2018) identified a 247.5 kb deletion encompassing exons 2 to 6 of SH3KBP1 in 2 brothers with recurrent infections and impaired antibody responses (PMID: 29636373). The proband was a 12-year-old boy with low serum IgM, IgG2, and IgG4 levels who experienced recurrent b acterial infections until age 4 years old, when his infection history apparently improved. He had normal levels of circulating B cells and subtypes, including transitional, naive, memory cells, and plasmablasts, although there were some subtle abnormalities. However, his IgG response to pneumococcal vaccination (polysaccharide) was insufficient, although responses to tetanus toxoid were normal. He had no abnormalities of T cell proliferation, activation, or intracellular signaling. His brother had had panhypogammaglobulinemia complicated by constant infections (i.e. sinusitis, otitis media, pneumonia) since early childhood; he died at age 15 years from a bacterial infection complicated by septic shock and multiorgan failure. In addition, both brothers had been diagnosed at age 11 with ADHD, mildly impaired adaptive skills, and obesity, reminiscent of the murine phenotypes related to CNS-specific CIN85 LOF (PMID: 20551902). Because T cells still showed robust TCR signaling and function in the absence of CIN85, the authors concluded that the antibody deficiencies seen in these patients was unlikely due to primary defects in T cell help for antigen-stimulated B cells, but more likely attributable to a B-cell intrinsic deficit of antigen reactivity. Indeed, Kometani et al. (2011) had shown that expression of a constitutively active version of IKK-β bypassed the need for canonical NF-κB activation in the conditional CIN85 mouse mutant, and corrected its defective antibody response to T cell-independent type II antigens (PMID: 21708930). [Load More]

[Reviewed by Xiao P. Peng on 2022-08-30 21:30:33]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CVID19 Immunodeficiency, common variable, 19 XLRdict. icon Loss of Function 300310www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of SH3KBP1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
203 ENST00000379716.5 CCDS55383 protein_coding 13 No 3819 NM_001184960
204 ENST00000379726.8 protein_coding No 1941 NM_001410756
205 ENST00000397821.8 CCDS14193 Select protein_coding 18 Yes 4728 NM_031892
212 ENST00000699668.1 protein_coding No NM_001353891
214 ENST00000699670.1 protein_coding No NM_001410757
215 ENST00000699671.1 protein_coding No NM_001353892
216 ENST00000699672.1 nonsense_mediated_decay No XM_054326931
217 ENST00000699673.1 protein_coding No NM_001353890
225 ENST00000699720.1 protein_coding No NM_001353895
226 ENST00000699721.1 protein_coding No XM_011545502
228 ENST00000699723.1 protein_coding No NM_001024666
230 ENST00000699725.1 protein_coding No XM_011545499
231 ENST00000699726.1 protein_coding No NM_001353893
232 ENST00000699727.1 nonsense_mediated_decay No XM_054326921
234 ENST00000699729.1 protein_coding No NM_001410758
237 ENST00000699732.1 protein_coding No XM_017029467
238 ENST00000699733.1 protein_coding No NM_001353894
239 ENST00000699734.1 nonsense_mediated_decay No XM_054326929
243 ENST00000699738.1 protein_coding No NM_001353897

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in SH3KBP1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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