Information on STAT1

Basic details

Alt. symbols: STAT91 | ISGF-3

Approved name: signal transducer and activator of transcription 1
Alt. names: signal transducer and activator of transcription 1, 91kD, signal transducer and activator of transcription 1, 91kDa | transcription factor ISGF-3 components p91/p84

Location: 2q32.2: 190908460 - 191020960 (-)
Gene type: protein_coding, 41 transcripts.

Scores: LoFtool: 0.151000 | pLI: 0.99999428 | LOEUF: 0.187

HGNC: 11362

NCBI: 6772, RefSeq: NG_008294.1

Ensembl: ENSG00000115415.21

LRG_111 | Status: public

OMIM: 600555

Expression | ProteinAtlas

Normal function

STAT1 encodes a key transcription factor that mediates cellular responses to many key signaling molecules such as interferons (IFNs), cytokines (i.e. IL-17) and growth factors (i.e. KITLG/SCF, FGFs). STAT1 plays positive regulatory roles in the IFN-alpha/beta pathway, important for viral defense, and the IFN-gamma pathway, also relevant for mycobacterial defense. However, its activation is also important for modulating IL-17 pathway signaling, which is key in the response to Candidal infection. IFN cytokines binding to cell surface receptors leads to intracellular activation of the Jak kinases (TYK2 and JAK1) and downstream phosphorylation and dimerization of STAT1 with STAT2, but also with STAT3. The STAT dimers form different transcriptional complexes (i.e. ISGF3 in response to IFN-alpha/beta, GAF in response to IFN-gamma) that bind to IFN-responsive target genes in the nucleus, thereby inducing an anti-pathogen state in the cell (PMID: 28753426, 26479788).

Dysfunction and disease

STAT1 dysfunction is associated with susceptibility to 3 different types of infectious disease: mycobacterial, viral, and fungal (chronic mucocutaneous candidiasis-CMC). Thus, STAT1 mutations can lead to 3 kinds of primary immunodeficiency: 1) Immunodeficiency 31A, mycobacteriosis, autosomal dominant [MIM:614892]; 2) Immunodeficiency 31B, mycobacterial and viral infections, autosomal recessive [MIM:613796]; and 3) Immunodeficiency 31C, autosomal dominant [MIM:614162]. In general, patients with S TAT1 mutations causing mycobacterial and/or viral disease do not suffer from CMC (as the primary pathogenic mechanism involves dysregulated IFN signaling), and patients with CMC caused by other STAT1 mutations do not show increased risk for mycobacterial or viral diseases (as the primary pathogenic mechanism involves dysregulated IL-17 signaling). Loss-of-function (LOF) missense or frameshift mutations confer autosomal dominant or autosomal recessive susceptibility to intracellular agents through impairment of IFN?/IFN? immunity (viral diseases) and/or IFN? immunity (mycobacterial diseases). Patients with autosomal-dominant STAT1 deficiency show heterozygous mutations in the DNA-binding domain, the SH2 domain or the tyrosine residue Y701, which is mainly responsible for the activation of the protein through phosphorylation. Biallelic LOF mutations usually result in partial (or complete) deficiency of STAT1 protein and marked (or absolute) reduction of STAT1 phosphorylation and DNA-binding activity, predisposing patients to both viral and mycobacterial disease. Monoallelic dominant-negative LOF mutations in STAT1 usually result in partial STAT1 deficiency, predisposing to Mendelian susceptibility to mycobacterial disease. In contrast, monoallelic missense gain-of-function (GOF) mutations lead to autosomal dominant susceptibility to recurrent and severe fungal infections, mainly CMC, as a result of enhanced STAT1-mediated cellular responses to STAT1-dependent repressors and STAT3-dependent inducers of IL17-producing T cells. Some patients with GOF mutations can also show increased susceptibility to other infections and increased risk for autoimmunity or other forms of immune dysregulation (PMID: 27114460, 22651901). GOF mutations unfold their effect mainly by modulating the coiled-coil-domain, which in turn leads to an impairment of nuclear dephosphorylation of STAT1. Therefore, STAT1 remains activated at its DNA-binding site for a longer period, inhibiting genes necessary for TH17 development, relevant for the response against Candida albicans. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2022-05-24 13:03:39]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD31A Immunodeficiency 31A, mycobacteriosis ADdict. icon Loss of Function 614892www icon 0 (0 fams)
IMD31B Immunodeficiency 31B, mycobacterial and viral infections ARdict. icon Loss of Function 613796www icon 0 (0 fams)
IMD31C Immunodeficiency 31C ADdict. icon Gain of Function 614162www icon 15 (15 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of STAT1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000361099.8 1 CCDS2309 Select protein_coding 25 Yes 4116 NM_001384883,NM_001384885,NM_001384886,NM_001384887,NM_001384888,NM_001384889,NM_001384890,NM_001384891,NM_007315
225 ENST00000673942.1 protein_coding 25 No 3937 NM_001384882
212 ENST00000540176.6 CCDS2309 protein_coding 24 No 4020 XM_006712718
202 ENST00000392322.7 CCDS42793 protein_coding 23 No 2716 NM_139266
231 ENST00000698141.1 CCDS2309 protein_coding 26 No NM_001384881,NM_001384884
232 ENST00000698142.1 protein_coding No NM_001384880

Published variants

Found 12 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
T437I EX16 1619 c.1310C>T p.Thr437Ile missense_variant Pathogenic 1
M392T EX14 1484 c.1175T>C p.Met392Thr missense_variant Pathogenic 1
T385M EX14 1463 c.1154C>T p.Thr385Met missense_variant Pathogenic 3
F364L EX12 1399 c.1090T>C p.Phe364Leu missense_variant Uncertain significance 0
C324Y EX11 1280 c.971G>A p.Cys324Tyr missense_variant Likely Pathogenic 0
C324R EX11 1279 c.970T>C p.Cys324Arg missense_variant Pathogenic 1
R274Q EX10 1130 c.821G>A p.Arg274Gln missense_variant Pathogenic 2
R274W EX10 1129 c.820C>T p.Arg274Trp missense_variant Pathogenic 1
A267V EX10 1109 c.800C>T p.Ala267Val missense_variant Pathogenic 2
V266I EX10 1105 c.796G>A p.Val266Ile missense_variant Risk allele 3
M202T EX8 914 c.605T>C p.Met202Thr missense_variant Pathogenic 0
EX3+3A>G IN3 c.128+3A>G splice_region_variant Uncertain significance 1

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2012Incomplete penetrance22573496
2001Incomplete penetrance11452125
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in STAT1

ID Year Title Journal PMID Variants
89 2015 Mutations in the TLR3 signaling pathway and beyond in adult ... Genes & Immun. 26513235 1
97 2019 Non-CF Bronchiectasis as a Possible Indicator of a Primary I... Klin. Pädiatrie 31340404 1
118 2021 Establishing the Molecular Diagnoses in a Cohort of 291 Pati... Front. Immunol. 34975878 1
162 2013 Dominant gain-of-function STAT1 mutations in FOXP3 wild-type... JACI 23534974 2
217 2018 Exome sequencing reveals gain-of-function mutations in STAT1... RAM 1
218 2017 STAT 1 gain of function mutation treated with ruxolitinib... Ann. Allerg. Asth. Immun. 1
285 2012 Chronic Mucocutaneous Candidiasis Caused by a Gain-of-Functi... jimmunol 22730530 1
286 2013 New and recurrent gain-of-function STAT1 mutations in patien... J. Med. Genet 23709754 2
287 2013 Signal transducer and activator of transcription 1 (STAT1) g... JACI 23541320 2
288 2016 The Extended Clinical Phenotype of 26 Patients with Chronic ... JoCI 26604104 4
319 2021 Genetic Analysis of a Cohort of 275 Patients with Hyper-IgE ... JoCI 34390440 3
351 2017 Alanine-scanning mutagenesis of human signal transducer and ... JACI 28011069 2
352 2019 Gain-of-function STAT1 mutation with familial lymphadenopath... Front.. Pediatr. 31114772 1
353 2017 New and recurrent STAT1 mutations in seven Chinese patients ... Int. J. Dermat. 27808400 2
530 2014 Fatal combined immunodeficiency associated with heterozygous... JACI 24239102 1
533 2016 Heterozygous STAT1 gain-of-function mutations underlie an un... Blood 27114460 2
539 2011 Gain-of-function human STAT1 mutations impair IL-17 immunity... JEM 21727188 2
544 2011 STAT1 Mutations in Autosomal Dominant Chronic Mucocutaneous ... N. Engl. J. Med. 21714643 2

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