Information on STAT2

Basic details

Alt. symbols: STAT113

Approved name: signal transducer and activator of transcription 2
Alt. names: signal transducer and activator of transcription 2, 113kD, signal transducer and activator of transcription 2, 113kDa

Location: 12q13.3: 56341597 - 56360203 (-)
Gene type: protein_coding, 42 transcripts.

Scores: LoFtool: 0.154000 | pLI: 0.04109474 | LOEUF: 0.319

HGNC: 11363

NCBI: 6773, RefSeq: NG_046314.1

Ensembl: ENSG00000170581.15

LRG_1329 | Status: public

OMIM: 600556

Expression | ProteinAtlas

Normal function

STAT2 encodes a member of the STAT (Signal transducer and activator of transcription) family of transcription factors, which mediate signaling by type I interferons (IFNs) IFN-alpha and IFN-beta. Following type I IFN binding to cell surface receptors, Jak kinases TYK2 and JAK1 are activated, leading to STAT1 and STAT2 recruitment and tyrosine phosphorylation. The phosphorylated STATs then dimerize and associate with IRF9/ISGF3G to form the ISGF3 transcription factor complex, which translocates to the nucleus to bind IFN-stimulated response elements (ISRE) and activate IFN-stimulated genes (PMID: 9020188, 23391734). STAT2 plays an additional negative feedback regulatory role in type I IFN signaling by recruiting USP18 to the type I IFN receptor subunit IFNAR2 to dampen the response to type I IFNs (PMID: 28165510). STAT2 has also been implicated as a regulator of mitochondrial fission by modulating the serine phosphorylation of DNM1L to control its GTPase activity (PMID: 26122121, 23391734, 9020188).

Dysfunction and disease

Biallelic STAT2 LOF and GOF mutations are both associated with autosomal recessive IEIs - the former with a primary immunodeficiency syndrome characterized by increased susceptibility to viral infections and adverse reactions to vaccination [OMIM: 616636] (PMID: 23391734) and the latter with severe early-onset type I IFNopathy [OMIM: 618886]. Reported patients with the latter were children of consanguineous parents who carried homozygous missense mutations affecting the same Arg148 residue withi n the STAT2/USP18 interacting domain, resulting in impaired STAT2 binding to and recruitment of USP18 to suppress IFNAR2-mediated inflammation (PMID: 31836668, 32092142). This manifests clinically as severe early onset neuroinflammation featuring apneic episodes, seizures, progressive intracranial calcification, parenchymal hemorrhage, abnormal cerebral white matter, and brainstem and cerebellar atrophy, along with evidence of systemic, multi-organ inflammation, including skin ulcerations, recurrent fevers, hepatosplenomegaly, cytopenias, and kidney injury. Adaptive immunophenotyping was largely normal, but one patient showed elevated T cell and low NK cell and monocyte frequencies. All patients showed significant elevations of a type I IFN gene signature, and some were additionally found to show elevated CD169 expression on monocytes and dendritic cells. [Load More]

[Reviewed by Xiao P. Peng on 2022-06-21 19:09:19]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD44 Immunodeficiency 44 ARdict. icon 616636www icon 0 (0 fams)
PTORCH3 Pseudo-TORCH syndrome 3 ARdict. icon Loss of Function 618886www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of STAT2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000314128.9 1 CCDS8917 Select protein_coding 24 Yes 4405 NM_001385113,NM_001385114,NM_005419
218 ENST00000651915.1 protein_coding 23 No 4319 NM_001385111
202 ENST00000418572.7 nonsense_mediated_decay No 1675 XM_047429470
210 ENST00000557235.5 CCDS55836 protein_coding 24 No 3073 NM_001385110,NM_001385115,NM_198332
240 ENST00000698193.1 protein_coding No XM_011538699

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in STAT2

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

Find laboratories offering tests

Check