Information on STAT2
Basic details
Alt. symbols: STAT113
Approved name: signal transducer and activator of transcription 2
Alt. names: signal transducer and activator of transcription 2, 113kD, signal transducer and activator of transcription 2, 113kDa
Location: 12q13.3: 56341597 - 56360203 (-)
Gene type: protein_coding, 42 transcripts.
Scores: LoFtool: 0.154000 | pLI: 0.04109474 | LOEUF: 0.319
Normal function
STAT2 encodes a member of the STAT (Signal transducer and activator of transcription) family of transcription factors, which mediate signaling by type I interferons (IFNs) IFN-alpha and IFN-beta. Following type I IFN binding to cell surface receptors, Jak kinases TYK2 and JAK1 are activated, leading to STAT1 and STAT2 recruitment and tyrosine phosphorylation. The phosphorylated STATs then dimerize and associate with IRF9/ISGF3G to form the ISGF3 transcription factor complex, which translocates to the nucleus to bind IFN-stimulated response elements (ISRE) and activate IFN-stimulated genes (PMID: 9020188, 23391734). STAT2 plays an additional negative feedback regulatory role in type I IFN signaling by recruiting USP18 to the type I IFN receptor subunit IFNAR2 to dampen the response to type I IFNs (PMID: 28165510). STAT2 has also been implicated as a regulator of mitochondrial fission by modulating the serine phosphorylation of DNM1L to control its GTPase activity (PMID: 26122121, 23391734, 9020188).
Dysfunction and disease
Biallelic STAT2 LOF and GOF mutations are both associated with autosomal recessive IEIs - the former with a primary immunodeficiency syndrome characterized by increased susceptibility to viral infections and adverse reactions to vaccination [OMIM: 616636] (PMID: 23391734) and the latter with severe early-onset type I IFNopathy [OMIM: 618886]. Reported patients with the latter were children of consanguineous parents who carried homozygous missense mutations affecting the same Arg148 residue withi n the STAT2/USP18 interacting domain, resulting in impaired STAT2 binding to and recruitment of USP18 to suppress IFNAR2-mediated inflammation (PMID: 31836668, 32092142). This manifests clinically as severe early onset neuroinflammation featuring apneic episodes, seizures, progressive intracranial calcification, parenchymal hemorrhage, abnormal cerebral white matter, and brainstem and cerebellar atrophy, along with evidence of systemic, multi-organ inflammation, including skin ulcerations, recurrent fevers, hepatosplenomegaly, cytopenias, and kidney injury. Adaptive immunophenotyping was largely normal, but one patient showed elevated T cell and low NK cell and monocyte frequencies. All patients showed significant elevations of a type I IFN gene signature, and some were additionally found to show elevated CD169 expression on monocytes and dendritic cells. [Load More]
[Reviewed by Xiao P. Peng on 2022-06-21 19:09:19]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of STAT2
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000314128.9 | 1 | CCDS8917 | Select | protein_coding | 24 | Yes | 4405 | NM_001385113,NM_001385114,NM_005419 |
218 | ENST00000651915.1 | protein_coding | 23 | No | 4319 | NM_001385111 | |||
202 | ENST00000418572.7 | nonsense_mediated_decay | No | 1675 | XM_047429470 | ||||
210 | ENST00000557235.5 | CCDS55836 | protein_coding | 24 | No | 3073 | NM_001385110,NM_001385115,NM_198332 | ||
240 | ENST00000698193.1 | protein_coding | No | XM_011538699 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in STAT2
ID | Year | Title | Journal | PMID | Variants |
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