Information on SYK

Basic details

Alt. symbols: p72Syk

Approved name: spleen associated tyrosine kinase
Alt. names: spleen tyrosine kinase

Location: 9q22.2: 90801787 - 90898549 (+)
Gene type: protein_coding, 5 transcripts.

Scores: LoFtool: 0.007920 | pLI: 0.99854006 | LOEUF: 0.185

HGNC: 11491

NCBI: 6850, RefSeq: NG_017046.2

Ensembl: ENSG00000165025.15

LRG_ | Status: none

OMIM: 600085

Expression | ProteinAtlas

Normal function

SYK encodes a non-receptor tyrosine kinase (NRTK) of the SRC subfamily that mediates signal transduction downstream of a variety of transmembrane receptors, including classical immunoreceptors like the B-cell receptor (BCR) and T-cell receptor (TCR). Initially identified as essential for BCR signaling, SYK is necessary for the maturation of B-cells (most probably at the pro-B to pre-B transition) via phosphorylation and activation of targets such as BLNK, PLCG1 and BTK. It also regulates several biological processes including innate and adaptive immune responses to fungal, bacterial and viral pathogens, cell adhesion, osteoclast maturation, platelet activation and vascular development. SYK assembles into signaling complexes with activated receptors at the plasma membrane via interaction between its SH2 domains and the receptor tyrosine-phosphorylated ITAM domains. The association with the receptor can also be indirect and mediated by adapter proteins containing ITAM or partial hemITAM domains. The phosphorylation of the ITAM domains is generally mediated by SRC subfamily kinases upon engagement of the receptor. More rarely signal transduction via SYK could be ITAM-independent. Activated upon BCR engagement, it phosphorylates and activates BLNK an adapter linking the activated BCR to downstream signaling adapters and effectors. It also phosphorylates and activates PLCG1 and the PKC signaling pathway. It also phosphorylates BTK and regulates its activity in B-cell antigen receptor (BCR)-coupled signaling. In addition to its function downstream of BCR plays also a role in T-cell receptor signaling.

Dysfunction and disease

Monoallelic gain-of-function (GOF) mutations in this gene have been recently associated with an immune dysregulation and systemic inflammation syndrome (PMID: 33782605). These GOF mutations included: p.S550F (found in cases with very early disease onset), p.P342T, p.M450I, and p.A353T. Truncating mutations in SYK have, on the other hand, been found in solid tumors (https://ascopubs.org/doi/abs/10.1200/JCO.2020.38.15_suppl.e13519). SYK inhibitors are used to treat leukemia and lymphoma (PMID: 319 43762, 31771968, 31782972, 32005797, 33089525). Syk deletion, depletion or inhibition has been shown to reduce autoimmune or inflammatory responses in a number of mouse models of disease, including autoimmune arthritis (PMID: 22914861), chronic recurrent multifocal osteomyelitis (CRMO) (PMID: 31719149), airway fibrosis (PMID: 26308240), glomerulonephritis (PMID: 26251216), GI inflammation (PMID: 27559049, 30231985), and vasculopathy (PMID: 27102960, 29545260). On the other hand, dominant negative truncation mutants of SYK have been used in mouse studies and shown to result in impaired BCR signaling as well as impaired complement-mediated phagocytosis (PMID: 9707420, 9730884, 16449524). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2022-12-08 16:11:50]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD82 Immunodeficiency 82 with systemic inflammation ADdict. icon Gain of Function 619381www icon 6 (5 fams)

Transcripts of SYK

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000375747.5 CCDS47992 protein_coding 13 No 4908 XM_047423810
203 ENST00000375751.8 CCDS47992 protein_coding 13 No 4936 NM_001135052,NM_001174168
204 ENST00000375754.9 CCDS6688 Select protein_coding 14 Yes 4973 NM_003177
201 ENST00000375746.1 CCDS6688 protein_coding 14 No 4990 NM_001174167

Published variants

Found 7 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
Y323F EX8 1084 c.968A>T p.Tyr323Phe missense_variant Uncertain significance 0
P342T EX9 1140 c.1024C>A p.Pro342Thr missense_variant Pathogenic 1
A353T EX9 1173 c.1057G>A p.Ala353Thr missense_variant Likely Pathogenic 1
M450I EX10 1483 c.1350G>A p.Met450Ile missense_variant Likely Pathogenic 1
Y525/526F EX11 1690-1693 c.1574_1577delinsTCTT p.Tyr525_Tyr526delinsPhePhe missense_variant Uncertain significance 0
S550Y EX12 1765 c.1649C>A p.Ser550Tyr missense_variant Pathogenic 1
S550F EX12 1765 c.1649C>T p.Ser550Phe missense_variant Pathogenic 2

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in SYK

ID Year Title Journal PMID Variants
776 2021 Gain-of-function variants in SYK cause immune dysregulation ... Nat. Genet. 33782605 7

Phenotypic & functional assays available?

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