Information on TNFRSF13C

Basic details

Alt. symbols: BAFFR | CD268

Approved name: TNF receptor superfamily member 13C
Alt. names: tumor necrosis factor receptor superfamily, member 13C

Location: 22q13.2: 41922032 - 41926806 (-)
Gene type: protein_coding, 1 transcripts.

Scores: LoFtool: | pLI: 0.64105469 | LOEUF: 1.270

HGNC: 17755

NCBI: 115650, RefSeq: NG_007579.1

Ensembl: ENSG00000159958.7

LRG_184 | Status: public

OMIM: 606269

Expression | ProteinAtlas

Normal function

This gene encodes the B-cell activating factor receptor (BAFF-R), a type III transmembrane protein containing a single extracellular cysteine-rich domain. BAFF-R is a membrane protein of the TNF receptor superfamily which recognizes BAFF, an essential factor for B cell maturation and survival. In B cell maturation, due to regulation by BAFF-R, only a limited amount of B-cell will survive. B cell-activating factor (BAFF) enhances B-cell survival in vitro and is a regulator of the peripheral B-cell population.

Dysfunction and disease

Biallelic mutations in TNFRSF13C have been shown to cause a form of adult-onset autosomal recessive antibody deficiency: Immunodeficiency, common variable, 4 (CVID4) [MIM:613494]. Increased levels of BAFF in serum have been observed for some SLE patients. Therefore, it has been proposed that abnormally high levels of BAFF may contribute to the pathogenesis of autoimmune diseases by enhancing the survival of autoreactive B cells. Overexpression of Baff in mice results in mature B-cell hyperplasia and symptoms of systemic lupus erythematosus (SLE). Surface protein phenotyping of patient B cells showed a developmental arrest after the transitional stage and before the cells became mature follicular B cells. In vitro functional expression studies showed that the mutant protein failed to bind BAFF and failed to induce downstream NFKB processing Warnatz et al. (2009). [Load More]

[Reviewed by Andrés Caballero-Oteyza on ]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CVID4 Immunodeficiency, common variable, 4 ARdict. icon 613494www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of TNFRSF13C

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000291232.5 1 CCDS14024 Select protein_coding 3 Yes 3923 NM_052945

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
H159Y EX3 508 c.475C>T p.His159Tyr missense_variant Risk allele 5

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TNFRSF13C

ID Year Title Journal PMID Variants
118 2021 Establishing the Molecular Diagnoses in a Cohort of 291 Pati... Front. Immunol. 34975878 1
145 2015 A BAFF receptor His159Tyr mutation in Sjögren's syndrome-rel... Arthr. & Rheum. 26097183 1
146 2010 A BAFF-R mutation associated with non-Hodgkin lymphoma alter... JEM 21041452 1
147 2012 Three different classifications, B lymphocyte subpopulations... JoCI 22699762 1
148 2016 Monoallelic BAFFR P21R/H159Y Mutations and Familiar Primary ... JoCI 26613719 1

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