Information on TNFRSF13C
Basic details
Alt. symbols: BAFFR | CD268
Approved name: TNF receptor superfamily member 13C
Alt. names: tumor necrosis factor receptor superfamily, member 13C
Location: 22q13.2: 41922032 - 41926806 (-)
Gene type: protein_coding, 1 transcripts.
Scores: LoFtool: | pLI: 0.64105469 | LOEUF: 1.270
Normal function
This gene encodes the B-cell activating factor receptor (BAFF-R), a type III transmembrane protein containing a single extracellular cysteine-rich domain. BAFF-R is a membrane protein of the TNF receptor superfamily which recognizes BAFF, an essential factor for B cell maturation and survival. In B cell maturation, due to regulation by BAFF-R, only a limited amount of B-cell will survive. B cell-activating factor (BAFF) enhances B-cell survival in vitro and is a regulator of the peripheral B-cell population.
Dysfunction and disease
Biallelic mutations in TNFRSF13C have been shown to cause a form of adult-onset autosomal recessive antibody deficiency: Immunodeficiency, common variable, 4 (CVID4) [MIM:613494]. Increased levels of BAFF in serum have been observed for some SLE patients. Therefore, it has been proposed that abnormally high levels of BAFF may contribute to the pathogenesis of autoimmune diseases by enhancing the survival of autoreactive B cells. Overexpression of Baff in mice results in mature B-cell hyperplasia and symptoms of systemic lupus erythematosus (SLE). Surface protein phenotyping of patient B cells showed a developmental arrest after the transitional stage and before the cells became mature follicular B cells. In vitro functional expression studies showed that the mutant protein failed to bind BAFF and failed to induce downstream NFKB processing Warnatz et al. (2009). [Load More]
[Reviewed by Andrés Caballero-Oteyza on ]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of TNFRSF13C
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000291232.5 | 1 | CCDS14024 | Select | protein_coding | 3 | Yes | 3923 | NM_052945 |
Published variants
Found 1 variants
Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |