Information on TNFSF13

Basic details

Alt. symbols: APRIL | CD256

Approved name: TNF superfamily member 13
Alt. names: tumor necrosis factor (ligand) superfamily, member 13

Location: 17p13.1: 7558292 - 7561608 (+)
Gene type: protein_coding, 9 transcripts.

Scores: LoFtool: 0.200000 | pLI: 0.87776801 | LOEUF: 0.438

HGNC: 11928

NCBI: 8741, RefSeq: NG_029949.1

Ensembl: ENSG00000161955.17

LRG_ | Status: none

OMIM: 604472

Expression | ProteinAtlas

Normal function

TNFSF13 encodes APRIL, which shares overlapping receptors and functions with BAFF, in addition to being able to form heterotrimers with it. APRIL secreted by BM eosinophils is thought to be important for the maintenance of Ig-secreting plasma cells (PMID: 21217761). Because of their partial functional redundancy and complex interactions, it has been difficult to deconvolute the specific roles played by BAFF and APRIL in the formation of mature B-cell populations.

Dysfunction and disease

Yeh et al. (2020) recently identified a homozygous TNFSF13 frameshift mutation that abolished mRNA and protein expression in an adult with diagnosis of CVID on the basis of mild infections and progressive hypogammaglobulinemia, but normal T- and B-cell levels and proliferative responses (PMID: 32298700). Patient cells also showed normal BCR repertoires, consistent with unperturbed SHM and CSR. In contrast to largely normal findings from prior animal data (PMID: 14988498, 14729948), the patient h ad low levels of all isotypes with significant MZ B cell expansion and markedly reduced peripheral blood plasmacytes. The authors hypothesized that the recirculating MZ memory B cells required continuous signaling from APRIL and other ligands to sustain lifelong antigen-independent, plasmacyte differentiation, maintenance, and baseline Ig production. Indeed, addition of recombinant APRIL to the patient's iPSC-monocyte-derived DC (moDC) co-culture with B cells rescued the latter’s impaired proliferation and plasmacyte differentiation. [Load More]

[Reviewed by Xiao P. Peng on 2022-07-10 05:39:07]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
APRILD APRIL deficiency ARdict. icon Loss of Function - 1 (1 fams)

Transcripts of TNFSF13

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
209 ENST00000625791.2 CCDS56018 protein_coding 5 No 955 NM_001198623
204 ENST00000396542.5 CCDS56019 protein_coding 6 No 726 NM_001198624
203 ENST00000380535.8 CCDS73957 protein_coding 5 No 2195 NM_001198622
205 ENST00000396545.4 CCDS42256 protein_coding 7 No 1593 NM_172088
201 ENST00000338784.9 CCDS11111 Select protein_coding 6 Yes 1971 NM_003808
202 ENST00000349228.8 CCDS11112 protein_coding 5 No 2036 NM_172087

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
L170Cfs*5 EX5 798 c.508del p.Leu170CysfsTer5 frameshift_variant Pathogenic 1

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TNFSF13

ID Year Title Journal PMID Variants
680 2020 APRIL-dependent lifelong plasmacyte maintenance and immunogl... JACI 32298700 1

Phenotypic & functional assays available?

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