Information on CD40LG

Basic details

Alt. symbols: HIGM1 | IMD3 | TNFSF5 | CD40L | TRAP | gp39 | hCD40L | CD154

Approved name: CD40 ligand
Alt. names: tumor necrosis factor (ligand) superfamily, member 5 (hyper-IgM syndrome) | CD40 antigen ligand, tumor necrosis factor (ligand) superfamily member 5, T-B cell-activating molecule, TNF-related activation protein, hyper-IgM syndrome

Location: Xq26.3: 136648158 - 136660390 (+)
Gene type: protein_coding, 8 transcripts.

Scores: LoFtool: | pLI: 0.86443371 | LOEUF: 0.557

HGNC: 11935

NCBI: 959, RefSeq: NG_007280.1

Ensembl: ENSG00000102245.9

LRG_141 | Status: public

OMIM: 300386

Expression | ProteinAtlas

Normal function

The CD40LG encodes the protein known as CD40 ligand (CD154), which is found on the surface of T cells. CD40 ligand attaches to its receptor protein, CD40, which is located on the surface of B cells. Upon binding of CD40L, CD40 triggers a series of chemical signals that instruct B cells to mature and switch from being immunoglobulin M (IgM) class secreting cells to immunoglobulin G (IgG), immunoglobulin A (IgA), or immunoglobulin E (IgE) producing B cells. CD40 ligand is also necessary for T cells to interact with other cells of the immune system, and it plays a key role in T cell differentiation.

Dysfunction and disease

Hemizygous mutations in CD40LG can lead to recessive X-linked hyper-IgM (HIGM) syndrome [MIM:308230]. X-HIGM is a rare immunodeficiency characterized by normal or elevated serum IgM levels associated with markedly decreased IgG, IgA, and IgE, resulting in a profound susceptibility to bacterial infections and an increased susceptibility to opportunistic infections. Patients with X-linked HIGM also tend to have neutropenia, as well as a high rate of gastrointestinal and central nervous system infe ctions, often resulting in severe liver disease and/or neurodegeneration. [Load More]

[Reviewed by Hanna Haberstroh on 2020-07-27 14:30:48]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
HIGM1 Hyper-IgM syndrome type 1 XLRdict. icon 308230www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of CD40LG

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000370629.7 1 CCDS14659 Select protein_coding 5 Yes 1852 NM_000074

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
G219R EX5 746 c.655G>A p.Gly219Arg missense_variant Risk allele 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2001Cryptic splicing11675497
2024Skewed X-linked inactivation38265673Study reports a 43-yo female patient who carried the heterozygous c.288+1G>A pathogenic variant in CD40LG but presented with a CVID-like phenotype because of her skewed X-linked inactivation. mRNA expression studies showed a 14:86 ratio for the WT:MUT alleles.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in CD40LG

ID Year Title Journal PMID Variants
191 2000 A polymorphic CD40 ligand (CD154) molecule mediates CD40-dep... Immunology 10651941 1
192 2009 Clinical and laboratory findings in Hyper-IgM syndrome with ... JoCI 19575287 1
193 2010 A custom 148 gene-based resequencing chip and the SNP explor... Hum. Mut. 20652909 1
194 2011 Human X-linked variable immunodeficiency caused by a hypomor... Blood 21543760 1
195 2012 The polymorphism p.G219R of CD40L does not cause immunologic... Mol. Immunol. 22750225 1
196 2013 Hyper immunoglobulin M syndrome in a 15-year-old boy caused ... Ann. Allerg. Asth. Immun. 23622016 1
197 2018 Genetic Analysis of Patients with Two Different Types of Hyp... Immun. Invest. 30081731 1
198 2007 The structural basis of hyper IgM deficiency - CD40L mutatio... Am. J. Med. Genet. 17307885 1

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