Information on TRAF3

Basic details

Alt. symbols: CAP-1 | CD40bp | CRAF1 | LAP1 | RNF118

Approved name: TNF receptor associated factor 3
Alt. names: TNF receptorassociated factor 3 | CD40 associated protein 1 | CD40 binding protein | CD40 receptor associated factor 1 | LMP1associated protein 1 | RINGtype E3 ubiquitin transferase TRAF3

Location: 14q32.32: 102777449 - 102911500 (+)
Gene type: protein_coding, 13 transcripts.

Scores: LoFtool: | pLI: 0.99840567 | LOEUF: 0.224

HGNC: 12033

NCBI: 7187, RefSeq: NG_027973.1

Ensembl: ENSG00000131323.17

LRG_229 | Status: public

OMIM: 601896

Expression | ProteinAtlas

Normal function

TRAF3 is a member of the Tumor necrosis factor (TNF) receptor-associated factor (TRAF) protein family. TRAF3 participates in the signal transduction of CD40 and it is found to be a critical component of the lymphotoxin-beta receptor (LTbetaR) signaling complex, which induces NF-kappaB activation and cell death initiated by LTbeta ligation. Epstein-Barr virus encoded latent infection membrane protein-1 (LMP1) can interact with this and several other members of the TRAF family, which may be essential for the oncogenic effects of LMP1. TRAF3 plays a role in the regulation of antiviral responses and functions downstream of multiple TNF receptors and receptors that induce interferon-? (IFN-?), IFN-?, and IFN-? production, including Toll-like receptor 3 (TLR3), which is deficient in some patients with herpes simplex virus-1 encephalitis (HSE).

Dysfunction and disease

Only one mutation (p.Arg118Trp) has been associated with disease to date. Pérez de Diego et al. reported in 2010 a young French female with history of Herpes simplex encephalitis (HSE) in childhood. They showed that the mutation causes a dominant-negative loss of function in TRAF3. They concluded that TRAF3 deficiency confers susceptibility to HSE. This novel phenotype is also known as Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 5 in OMIM [MIM:614849]. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-06-22 11:58:10]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IIAE5 Susceptibility to acute infection-induced encephalopathy type 5 ADdict. icon Haploinsufficiency 614849www icon 0 (0 fams)
IDAIBM Immunodeficiency, autoimmunity, and risk of B cell malignancy ADdict. icon Haploinsufficiency - 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of TRAF3

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
205 ENST00000558700.5 nonsense_mediated_decay No 738 XM_017021620
203 ENST00000392745.8 1 CCDS9975 Select protein_coding 12 Yes 7806 NM_001385142,NM_001385143,NM_145725
204 ENST00000539721.5 CCDS55946 protein_coding 8 No 1786 NM_001199427
208 ENST00000560371.5 CCDS9975 protein_coding 11 No 7640 NM_003300
202 ENST00000351691.10 CCDS9976 protein_coding 10 No 2239 NM_145726
210 ENST00000699894.1 CCDS9975 protein_coding 12 No XM_017021618
209 ENST00000699893.1 protein_coding No XM_017021619

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
R118W EX5 735 c.352C>T p.Arg118Trp missense_variant Risk allele 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TRAF3

ID Year Title Journal PMID Variants
212 2010 Human TRAF3 adaptor molecule deficiency leads to impaired To... Immunity 20832341 1

Phenotypic & functional assays available?

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