Information on TRAF3
Basic details
Alt. symbols: CAP-1 | CD40bp | CRAF1 | LAP1 | RNF118
Approved name: TNF receptor associated factor 3
Alt. names: TNF receptorassociated factor 3 | CD40 associated protein 1 | CD40 binding protein | CD40 receptor associated factor 1 | LMP1associated protein 1 | RINGtype E3 ubiquitin transferase TRAF3
Location: 14q32.32: 102777449 - 102911500 (+)
Gene type: protein_coding, 13 transcripts.
Scores: LoFtool: | pLI: 0.99840567 | LOEUF: 0.224
Normal function
TRAF3 is a member of the Tumor necrosis factor (TNF) receptor-associated factor (TRAF) protein family. TRAF3 participates in the signal transduction of CD40 and it is found to be a critical component of the lymphotoxin-beta receptor (LTbetaR) signaling complex, which induces NF-kappaB activation and cell death initiated by LTbeta ligation. Epstein-Barr virus encoded latent infection membrane protein-1 (LMP1) can interact with this and several other members of the TRAF family, which may be essential for the oncogenic effects of LMP1. TRAF3 plays a role in the regulation of antiviral responses and functions downstream of multiple TNF receptors and receptors that induce interferon-? (IFN-?), IFN-?, and IFN-? production, including Toll-like receptor 3 (TLR3), which is deficient in some patients with herpes simplex virus-1 encephalitis (HSE).
Dysfunction and disease
Only one mutation (p.Arg118Trp) has been associated with disease to date. Pérez de Diego et al. reported in 2010 a young French female with history of Herpes simplex encephalitis (HSE) in childhood. They showed that the mutation causes a dominant-negative loss of function in TRAF3. They concluded that TRAF3 deficiency confers susceptibility to HSE. This novel phenotype is also known as Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 5 in OMIM [MIM:614849]. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2020-06-22 11:58:10]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of TRAF3
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
205 | ENST00000558700.5 | nonsense_mediated_decay | No | 738 | XM_017021620 | ||||
203 | ENST00000392745.8 | 1 | CCDS9975 | Select | protein_coding | 12 | Yes | 7806 | NM_001385142,NM_001385143,NM_145725 |
204 | ENST00000539721.5 | CCDS55946 | protein_coding | 8 | No | 1786 | NM_001199427 | ||
208 | ENST00000560371.5 | CCDS9975 | protein_coding | 11 | No | 7640 | NM_003300 | ||
202 | ENST00000351691.10 | CCDS9976 | protein_coding | 10 | No | 2239 | NM_145726 | ||
210 | ENST00000699894.1 | CCDS9975 | protein_coding | 12 | No | XM_017021618 | |||
209 | ENST00000699893.1 | protein_coding | No | XM_017021619 |
Published variants
Found 1 variants
Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |