Information on TRAF3IP2

Alt. symbols: C6orf4 | C6orf5 | C6orf6 | C6orf2 | DKFZP586G0522 | ACT1 | CIKS

Approved name: TRAF3 interacting protein 2
Alt. names: chromosome 6 open reading frame 5, chromosome 6 open reading frame 2

Location: 6q21: 111555381 - 111606906 (-)
Gene type: protein_coding, 21 transcripts.

Scores: LoFtool: 0.893000 | pLI: 0.00007110 | LOEUF: 0.979

HGNC: 1343

NCBI: 10758, RefSeq: NG_032030.2

Ensembl: ENSG00000056972.21

LRG_1337 | Status: public

OMIM: 607043

Expression | ProteinAtlas

Gene Ontology (GO)
  • Molecular function:
  • Cell component:
  • Biological process: positive regulation of canonical NF-kappaB signal transduction [GO:0043123]; humoral immune response [GO:0006959]
Normal function

TRAF3IP2 encodes encodes Act1, an adapter protein involved in IL-17 receptor and CD40 signaling pathways, as well as Rel/NF-kappaB-dependent cytokine responses, thus playing a role in both adaptive and innate immune responses to pathogens, inflammatory signals and stress. Act1 interacts with TRAF proteins (tumor necrosis factor receptor-associated factors) and either I-kappaB kinase or MAP kinase to activate either NF-kappaB or Jun kinase. TRAF3IP2 encodes several alternative transcripts. Overexpression of a noncoding RNA transcript, which is transcribed in the opposite orientation, has been shown to reduce the expression of at least one of TRAF3IP2 protein-coding transcripts, suggesting a potential regulatory role.

Dysfunction and disease

Boisson et al. (2013) identified a homozygous missense SEFIR domain variant (p.T536I) in 2 siblings with autosomal recessive familial mucocutaneous candidiasis [MIM:615527], while homozygosity for another variant (p.T438N) was reported for a family of 4 affected individuals with classic discoid lupus and generalized folliculitis (PMID: 32350852). Consanguinity was present in both cases. Ciccacci et al. (2013) suggested that some TRAF3IP2 variants may be associated with increased risk of cutaneou s extraintestinal manifestations of IBD (PMID: 22445837). Other SNPs in the gene have been also associated with increased susceptibility to Psoriasis/psoriatic arthritis (PMID: 20953186, 20953188, 22581863) [MIM:614070]. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-04-27]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CANDF8 Candidiasis, familial 8 ARdict. icon 615527www icon 0 (0 fams)

Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of TRAF3IP2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000340026.10 CCDS5092 protein_coding 10 No 2785 NM_147200
206 ENST00000368735.1 CCDS55049 protein_coding 4 No 903 NM_001164283
207 ENST00000368761.11 1 CCDS5093 Select protein_coding 9 Yes 5833 NM_147686
202 ENST00000359831.8 CCDS55050 protein_coding 9 No 2264 NM_001164281

Published variants

Found 2 variants

Var.name ⓘ Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
N404S EX5 1806 c.1211A>G p.Asn404Ser missense_variant Likely Benign 0
D19N EX3 650 c.55G>A p.Asp19Asn missense_variant Risk Factor 2

Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TRAF3IP2

Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.

ID Year Title Journal PMID Variants
386 2010 Genome-wide asociation study identifies a psoriasis suscepti... Nat. Genet. 20953188 1
387 2010 Common variants at TRAF3IP2 are associated with susceptibili... Nat. Genet. 20953186 1
388 2012 Identification of low-frequency TRAF3IP2 coding variants in ... Arth. Res. & Therapy 22513239 1
389 2013 An ACT1 mutation selectively abolishes interleukin-17 respon... Immunity 24120361 1
390 2013 TRAF3IP2 gene and systemic lupus erythematosus: A ssociation... Immunogenetics 23836313 1
391 2019 The Act1 D10N missense variant impairs CD40 signaling in hum... Genes & Immun. 29302052 1
470 2017 Rare coding variants in PLCG2, ABI3, and TREM2 implicate mic... Nat. Genet. 28714976 1

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