Information on TRAF3IP2
Alt. symbols: C6orf4 | C6orf5 | C6orf6 | C6orf2 | DKFZP586G0522 | ACT1 | CIKS
Approved name: TRAF3 interacting protein 2
Alt. names: chromosome 6 open reading frame 5, chromosome 6 open reading frame 2
Location: 6q21: 111555381 - 111606906 (-)
Gene type: protein_coding, 21 transcripts.
Scores: LoFtool: 0.893000 | pLI: 0.00007110 | LOEUF: 0.979
Gene Ontology (GO)
- Molecular function:
- Cell component:
- Biological process: positive regulation of canonical NF-kappaB signal transduction [GO:0043123]; humoral immune response [GO:0006959]
Normal function
TRAF3IP2 encodes encodes Act1, an adapter protein involved in IL-17 receptor and CD40 signaling pathways, as well as Rel/NF-kappaB-dependent cytokine responses, thus playing a role in both adaptive and innate immune responses to pathogens, inflammatory signals and stress. Act1 interacts with TRAF proteins (tumor necrosis factor receptor-associated factors) and either I-kappaB kinase or MAP kinase to activate either NF-kappaB or Jun kinase. TRAF3IP2 encodes several alternative transcripts. Overexpression of a noncoding RNA transcript, which is transcribed in the opposite orientation, has been shown to reduce the expression of at least one of TRAF3IP2 protein-coding transcripts, suggesting a potential regulatory role.
Dysfunction and disease
Boisson et al. (2013) identified a homozygous missense SEFIR domain variant (p.T536I) in 2 siblings with autosomal recessive familial mucocutaneous candidiasis [MIM:615527], while homozygosity for another variant (p.T438N) was reported for a family of 4 affected individuals with classic discoid lupus and generalized folliculitis (PMID: 32350852). Consanguinity was present in both cases. Ciccacci et al. (2013) suggested that some TRAF3IP2 variants may be associated with increased risk of cutaneou s extraintestinal manifestations of IBD (PMID: 22445837). Other SNPs in the gene have been also associated with increased susceptibility to Psoriasis/psoriatic arthritis (PMID: 20953186, 20953188, 22581863) [MIM:614070]. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2021-04-27]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of TRAF3IP2
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000340026.10 | CCDS5092 | protein_coding | 10 | No | 2785 | NM_147200 | ||
206 | ENST00000368735.1 | CCDS55049 | protein_coding | 4 | No | 903 | NM_001164283 | ||
207 | ENST00000368761.11 | 1 | CCDS5093 | Select | protein_coding | 9 | Yes | 5833 | NM_147686 |
202 | ENST00000359831.8 | CCDS55050 | protein_coding | 9 | No | 2264 | NM_001164281 |
Published variants
Found 2 variants
Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in TRAF3IP2
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.