Information on TRAF3IP2
Basic details
Alt. symbols: C6orf4 | C6orf5 | C6orf6 | C6orf2 | DKFZP586G0522 | ACT1 | CIKS
Approved name: TRAF3 interacting protein 2
Alt. names: chromosome 6 open reading frame 5, chromosome 6 open reading frame 2
Location: 6q21: 111555381 - 111606906 (-)
Gene type: protein_coding, 21 transcripts.
Scores: LoFtool: 0.893000 | pLI: 0.00007110 | LOEUF: 0.979
Normal function
TRAF3IP2 encodes encodes Act1, an adapter protein involved in IL-17 receptor and CD40 signaling pathways, as well as Rel/NF-kappaB-dependent cytokine responses, thus playing a role in both adaptive and innate immune responses to pathogens, inflammatory signals and stress. Act1 interacts with TRAF proteins (tumor necrosis factor receptor-associated factors) and either I-kappaB kinase or MAP kinase to activate either NF-kappaB or Jun kinase. TRAF3IP2 encodes several alternative transcripts. Overexpression of a noncoding RNA transcript, which is transcribed in the opposite orientation, has been shown to reduce the expression of at least one of TRAF3IP2 protein-coding transcripts, suggesting a potential regulatory role.
Dysfunction and disease
Boisson et al. (2013) identified a homozygous missense SEFIR domain variant (p.T536I) in 2 siblings with autosomal recessive familial mucocutaneous candidiasis [MIM:615527], while homozygosity for another variant (p.T438N) was reported for a family of 4 affected individuals with classic discoid lupus and generalized folliculitis (PMID: 32350852). Consanguinity was present in both cases. Ciccacci et al. (2013) suggested that some TRAF3IP2 variants may be associated with increased risk of cutaneou s extraintestinal manifestations of IBD (PMID: 22445837). Other SNPs in the gene have been also associated with increased susceptibility to Psoriasis/psoriatic arthritis (PMID: 20953186, 20953188, 22581863) [MIM:614070]. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2021-04-27 15:36:52]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of TRAF3IP2
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000340026.10 | CCDS5092 | protein_coding | 10 | No | 2785 | NM_147200 | ||
206 | ENST00000368735.1 | CCDS55049 | protein_coding | 4 | No | 903 | NM_001164283 | ||
207 | ENST00000368761.11 | 1 | CCDS5093 | Select | protein_coding | 9 | Yes | 5833 | NM_147686 |
202 | ENST00000359831.8 | CCDS55050 | protein_coding | 9 | No | 2264 | NM_001164281 |
Published variants
Found 2 variants
Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |