Information on TTC7A

Basic details

Alt. symbols: TTC7 | KIAA1140

Approved name: tetratricopeptide repeat domain 7A
Alt. names: tetratricopeptide repeat domain 7

Location: 2p21: 46915869 - 47076137 (+)
Gene type: protein_coding, 22 transcripts.

Scores: LoFtool: 0.832000 | pLI: 0.00000000 | LOEUF: 1.285

HGNC: 19750

NCBI: 57217, RefSeq: NG_034143.2

Ensembl: ENSG00000068724.18

LRG_1323 | Status: public

OMIM: 609332

Expression | ProteinAtlas

Normal function

This protein is a component of a complex required to bind, shuttle, and tether phosphatidylinositol 4-kinase (PI4K) to the plasma membrane, where PI4K catalyzes the conversion of PI to PI4P. Synthesis of PI4P is an important regulatory step in the phosphatidyl inositol–phosphate (PIP) pathway, which is important for survival and intestinal epithelial cell polarity. TTC7A plays an important role in maintaining intestinal homeostasis (Jardine et al. 2019).

Dysfunction and disease

Biallelic mutations leading to TTC7A deficiency cause an autosomal recessive condition known as Gastrointestinal defects and immunodeficiency syndrome (GIDID) [MIM:243150]. To date, more than 50 patients with more than 20 distinct hypomorphic and truncating disease-causing mutations in TTC7A have been reported. Truncating mutations are associated with more severe phenotypes and are predicted to cause a complete loss of protein function. TTC7A deficiency shows heterogeneous intestinal and immunol ogic disease manifestations, including but not limited to multiple intestinal atresias, very early onset inflammatory bowel disease, loss of intestinal architecture, apoptotic enterocolitis, combined immunodeficiency, and various extra-intestinal features related to the skin and/or hair. Loss of TTC7A function in intestinal epithelial cells results in reduced PI4P production, which causes loss of cell polarity and pseudo-stratification, eventually leading to increased cell apoptosis. TTC7A deficiency is also correlated with increased phosphorylation of myosin light chain, which initiates actomyosin contraction and can therefore disturb junction and integrin adhesion proteins and promote cell lifting. Increased intestinal epithelial cell apoptosis, actomyosin contraction, and cell lifting disrupts epithelial barrier function. A weakened intestinal barrier results in the translocation of luminal bacteria into the lamina propria, which can trigger an inflammatory response (Jardine et al. 2019). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-07-07 06:56:33]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
GIDID1 Gastrointestinal defects and immunodeficiency syndrome ARdict. icon 243150www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of TTC7A

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000394850.6 CCDS74511 protein_coding 21 No 4306 NM_001288951
203 ENST00000409245.5 CCDS74510 protein_coding 21 No 3033 NM_001288953
204 ENST00000409825.5 nonsense_mediated_decay No 4739 XM_054343092
201 ENST00000319190.11 1 CCDS33193 Select protein_coding 20 Yes 5095 NM_001288955,NM_020458

Published variants

Found 2 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
K606R EX16 2073 c.1817A>G p.Lys606Arg missense_variant Uncertain significance 0
S696P EX18 2342 c.2086T>C p.Ser696Pro missense_variant Uncertain significance 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TTC7A

ID Year Title Journal PMID Variants
230 2013 Whole-exome sequencing identifies tetratricopeptide repeat d... JACI 23830146 2
231 2017 Bialellic Mutations in Tetratricopeptide Repeat Domain 7A (T... JoCI 28808844 2

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