Information on SKIC3

Basic details

Alt. symbols: TTC37 | KIAA0372 | THES

Approved name: SKI3 subunit of superkiller complex
Alt. names: KIAA0372 | thespin

Location: 5q15: 95461755 - 95555050 (-)
Gene type: protein_coding, 63 transcripts.

Scores: LoFtool: 0.944000 | pLI: 0.00000000 | LOEUF: 0.783

HGNC: 23639

NCBI: 9652, RefSeq: NG_023414.1

Ensembl: ENSG00000198677.13

LRG_173 | Status: public

OMIM: 614589

Expression | ProteinAtlas

Normal function

TTC37 encodes a component of the SKI complex, which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on the PAF1 complex (PAF1C).

Dysfunction and disease

Biallelic frameshift, nonsense, and splice site mutations in TTC37 are associated with autosomal recessive trichohepatoenteric syndrome 1 [MIM:222470]. A broad spectrum of clinical findings can be associated with this condition, including intrauterine growth retardation, woolly hair, dysmorphic craniofacial features, intractable diarrhea with villous atrophy in infancy, and immunodeficiency. Liver disease, which may manifest as neonatal hemochromatosis, hepatomegaly, transaminitis, cholestatic j aundice, and/or cirrhosis, generally contributes to the poor prognosis of affected patients. More recently, Christiansen et al. (2020) identified a heterozygous likely deleterious frameshift variant (S1330fs*14) in a 34-year-old patient diagnosed with “atypical CVID” at age 26 for her history of hypogammaglobulinemia, multiple sclerosis, recurrent miscarriages, and inflammatory bowel disease with an episode of autoimmune pancreatitis (PMID: 32047491). Of note, this variant also segregated with other family members (mother, brother and sister) who shared her symptoms, but was not found in her 2 unaffected brothers and healthy father. [Load More]

[Reviewed by Xiao P. Peng on 2022-07-08 05:45:21]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
THES1 Trichohepatoenteric syndrome 1 ARdict. icon 222470www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of SKIC3

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000358746.7 1 CCDS4072 Select protein_coding 43 Yes 5677 NM_014639
249 ENST00000698484.1 nonsense_mediated_decay No XM_047417938

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in SKIC3

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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