Information on SKIC3
Basic details
Alt. symbols: TTC37 | KIAA0372 | THES
Approved name: SKI3 subunit of superkiller complex
Alt. names: KIAA0372 | thespin
Location: 5q15: 95461755 - 95555050 (-)
Gene type: protein_coding, 63 transcripts.
Scores: LoFtool: 0.944000 | pLI: 0.00000000 | LOEUF: 0.783
Normal function
TTC37 encodes a component of the SKI complex, which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on the PAF1 complex (PAF1C).
Dysfunction and disease
Biallelic frameshift, nonsense, and splice site mutations in TTC37 are associated with autosomal recessive trichohepatoenteric syndrome 1 [MIM:222470]. A broad spectrum of clinical findings can be associated with this condition, including intrauterine growth retardation, woolly hair, dysmorphic craniofacial features, intractable diarrhea with villous atrophy in infancy, and immunodeficiency. Liver disease, which may manifest as neonatal hemochromatosis, hepatomegaly, transaminitis, cholestatic j aundice, and/or cirrhosis, generally contributes to the poor prognosis of affected patients. More recently, Christiansen et al. (2020) identified a heterozygous likely deleterious frameshift variant (S1330fs*14) in a 34-year-old patient diagnosed with “atypical CVID” at age 26 for her history of hypogammaglobulinemia, multiple sclerosis, recurrent miscarriages, and inflammatory bowel disease with an episode of autoimmune pancreatitis (PMID: 32047491). Of note, this variant also segregated with other family members (mother, brother and sister) who shared her symptoms, but was not found in her 2 unaffected brothers and healthy father. [Load More]
[Reviewed by Xiao P. Peng on 2022-07-08 05:45:21]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of SKIC3
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000358746.7 | 1 | CCDS4072 | Select | protein_coding | 43 | Yes | 5677 | NM_014639 |
249 | ENST00000698484.1 | nonsense_mediated_decay | No | XM_047417938 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in SKIC3
ID | Year | Title | Journal | PMID | Variants |
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