Information on TYK2

Basic details

Alt. symbols: JTK1

Approved name: tyrosine kinase 2
Alt. names: nonreceptor tyrosineprotein kinase TYK2

Location: 19p13.2: 10350528 - 10380608 (-)
Gene type: protein_coding, 35 transcripts.

Scores: LoFtool: 0.209000 | pLI: 0.00431448 | LOEUF: 0.564

HGNC: 12440

NCBI: 7297, RefSeq: NG_007872.1

Ensembl: ENSG00000105397.16

LRG_121 | Status: public

OMIM: 176941

Expression | ProteinAtlas

Normal function

TYK2 encodes a non-receptor tyrosine kinase of the Janus kinase (JAK) family and plays roles in antiviral responses downstream of cytokine and IFN receptors. TYK2 protein associates with the cytoplasmic domain of type I and type II cytokine receptors and promotes cytokine signals by phosphorylating receptor subunits. It is also a component of both the type I and type III interferon signalling pathways. TYK2 is involved in the Th1 differentiation pathway and RET signalling cascade.

Dysfunction and disease

Biallelic frameshift, nonsense, and splice site mutations leading to TYK2 deficiency have previously been associated with primary immunodeficiencies with predisposition to cutaneous viral infection, atypical mycobacteriosis and fungal infection, in the context of autosomal recessive hyperIgE syndrome (AR-HIES) [MIM:611521], but also independently (PMID: 17088085, 22402565, 26304966, 29725107). Homozygosity for the common P1104A variant has been linked to tuberculosis susceptibility (PMID: 310684 74). One heterozygous missense mutation (A53T) was reported for a previously healthy adult patient with herpes simplex encephalitis and associated with significantly impaired CXCL10 and IFN-gamma viral responses (PMID: 26513235). Other studies have associated TYK2 monoallelic gain-of-function (GOF) variants to increased risk for certain blood cancers, such as acute lymphoblastic leukemia (ALL) (PMID: 27733777), and as protective or risk alleles for many autoimmune diseases (i.e. systemic lupus erythematosus, multiple sclerosis, Crohn’s disease, psoriasis, type 1 diabetes, and primary biliary cirrhosis) (PMID: 23359498). While some missense variants are considered to exert gain-of-function or dominant negative effects, others have been characterized as loss-of-function (PMID: 10908660, 14500783, 22744673, 23359498, 23471820). Moreover, TYK2 gene translocations and fusions with the gene NPM1 have been linked to lymphomatoid papulosis. [Load More]

[Reviewed by Xiao P. Peng on 2022-06-25 11:07:01]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD35 Immunodeficiency 35 ARdict. icon 611521www icon 1 (1 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of TYK2

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
207 ENST00000525976.6 protein_coding 24 No 495 NM_001385197
218 ENST00000531836.7 protein_coding 25 No 644 NM_001385199,NM_001406461
219 ENST00000533334.2 nonsense_mediated_decay No 725 XM_047439306
202 ENST00000524462.5 protein_coding 21 No 3456 XM_011528249
205 ENST00000525621.6 1 CCDS12236 Select protein_coding 25 Yes 4243 NM_001385200,NM_001385201,NM_001385202,NM_001385203,NM_001385204,NM_001385205,NM_001385206,NM_001385207,NM_003331
219 ENST00000699355.1 nonsense_mediated_decay No XM_047439307
224 ENST00000699360.1 protein_coding No NM_001385198

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
C70Sfs*21 EX4 587-590 c.209_212del p.Cys70SerfsTer21 frameshift_variant Pathogenic 1

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in TYK2

ID Year Title Journal PMID Variants
764 2006 Human tyrosine kinase 2 deficiency reveals its requisite rol... Immunity 17088085 1

Phenotypic & functional assays available?

Find laboratories offering tests

Check