Information on USP18
Basic details
Alt. symbols: ISG43 | PTORCH2 | UBP43
Approved name: ubiquitin specific peptidase 18
Alt. names: ubiquitin specific protease 18 | Ubl carboxyl-terminal hydrolase 18
Location: 22q11.21: 18149843 - 18177397 (+)
Gene type: protein_coding, 5 transcripts.
Scores: LoFtool: 0.519000 | pLI: 0.39259870 | LOEUF: 0.742
Normal function
USP18 encodes an isopeptidase that binds to and cleaves ISG15 from conjugated proteins, thus regulating the critical cellular balance of ISG15-conjugated proteins (PMID: 11788588). USP18 also competes with JAK1 for binding to the IFNAR2 complex to negatively regulate IFN signaling in a deconjugation-independent manner (PMID: 32957626, 28165510, 27325888).
Dysfunction and disease
Biallelic USP18 LOF causes a type I IFNopathy [OMIM: 617397] that is usually phenotypically more severe than ISG15 deficiency. Patients show a pseudoTORCH phenotype characterized by microcephaly, intra- and/or extra-cranial calcifications, structural CNS abnormalities, seizures, intracranial hemorrhage, bone marrow defects, metaphyseal changes on X-rays, liver dysfunction, respiratory failure, and hepatosplenomegaly. Knoblauch et al. (2003) showed that patient cells had an aberrant response to t ype I IFN, rather than increased IFN expression per se. Unlike previous LOF mutations, Alsohime et al. (2020) identified homozygosity for a splice variant that led to exon 10 skipping, producing a mutant USP18 protein with largely preserved deconjugation activity, but loss of ability to be stabilized by ISG15 or to suppress type I IFN signaling. This patient had largely normal immunophenotyping beyond isolated low levels of IgG and responded to treatment with high dose ruxolitinib (PMID: 31940699). [Load More]
[Reviewed by Xiao P. Peng on 2022-06-24 11:15:44]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of USP18
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000215794.8 | CCDS13752 | Select | protein_coding | 11 | Yes | 1858 | NM_017414 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | NM_017414.3: EX3-10 (>98%) |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in USP18
ID | Year | Title | Journal | PMID | Variants |
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