Information on WAS

Basic details

Alt. symbols: IMD2 | THC | WASP | WASPA

Approved name: WASP actin nucleation promoting factor
Alt. names: thrombocytopenia 1 (X-linked), Wiskott-Aldrich syndrome (eczema-thrombocytopenia), Wiskott-Aldrich syndrome | eczema-thrombocytopenia

Location: Xp11.23: 48676596 - 48691431 (+)
Gene type: protein_coding, 9 transcripts.

Scores: LoFtool: | pLI: 0.99120208 | LOEUF: 0.149

HGNC: 12731

NCBI: 7454, RefSeq: NG_007877.1

Ensembl: ENSG00000015285.12

LRG_125 | Status: public

OMIM: 300392

Expression | ProteinAtlas

Normal function

WAS encodes the Wiskott-Aldrich syndrome (WAS) protein (WASP), which serves as a critical mediator of signal transduction and actin cytoskeletal organization in hematopoietic cells (PMID: 14499269). Thus, WASP signaling is important for hematopoietic cell migration, anchoring, and localization (PMID: 15774550), as well as immune synapse formation (PMID: 12177428) and platelet production and turnover (PMID: 18854955). WASP activity is regulated by interaction with activated guanosine triphosphate (GTP)-loaded Cdc42 (PMID: 16246732) and post-translational modification (e.g., phosphorylation) (PMID: 14707117).

Dysfunction and disease

Hemizygous mutations in the gene are associated with at least 3 conditions collectively known as the WAS-related disorders: X-linked Thrombocytopenia (XLT) [OMIM: 313900], Wiskott-Aldrich syndrome (WAS) [OMIM: 301000], and X-linked Neutropenia (XLN) [OMIM: 300299]. Affected males with WAS have microthrombocytopenia with intermittent mucosal bleeding, bloody diarrhea, and intermittent or chronic petechiae and purpura; eczema; and recurrent bacterial and viral infections (GeneReviews). At least 40 % of those who survive the early complications develop autoimmune and/or autoinflammatory manifestations, such as hemolytic anemia, immune thrombocytopenic purpura, immune-mediated neutropenia, rheumatoid arthritis, vasculitis, and immune-mediated kidney and liver damage. Patients are also at increased risk of developing lymphomas, especially if exposed to EBV infection. XLT patients, who usually harbor milder allelic variants, share the microthrombocytopenia seen in WAS, but other complications such as eczema and immune dysfunction are usually mild or absent. XLN patients present with congenital neutropenia, myeloid dysplasia, and lymphocyte abnormalities. More than 350 pathogenic WAS variants have been published thus far. These have been found in all 12 exons, as well as noncoding regions. About half are missense variants that interfere with protein function or nonsense variants that lead to protein truncation. The remainder are splice site changes, small or large deletions/insertions, and complex rearrangements. Female carriers tend in general to be asymptomatic as a consequence of positive selection of cells with an active normal X chromosome, which results in a non-random inactivation of the mutated gene in affected cell lineages. [Load More]

[Reviewed by Xiao P. Peng on 2022-08-30 21:31:05]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
WAS Wiskott-Aldrich syndrome XLRdict. icon Loss of Function 301000www icon 3 (3 fams)
THC1 Thrombocytopenia 1 XLRdict. icon 313900www icon 0 (0 fams)
SCNX Severe congenital neutropenia, X-linked XLRdict. icon Gain of Function 300299www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not been completed yet. It is currently ongoing.

Transcripts of WAS

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000376701.5 1 CCDS14303 Select protein_coding 12 Yes 1829 NM_000377
207 ENST00000698625.1 CCDS14303 protein_coding 13 No XM_011543977
209 ENST00000698635.1 protein_coding 12 No XM_017029786

Published variants

Found 5 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
S242C EX7 779 c.724A>T p.Ser242Cys missense_variant Uncertain significance 1
R321* EX10 1016 c.961C>T p.Arg321Ter stop_gained Pathogenic 1
V332A EX10 1050 c.995T>C p.Val332Ala missense_variant Uncertain significance 0
P403L EX10 1263 c.1208C>T p.Pro403Leu missense_variant Uncertain significance 1
A433Efs*13 EX10 1345-1346 c.1291_1292dup p.Ala433GlufsTer13 frameshift_variant Pathogenic 1

Please mind that full curation (inclusion of all published variants) of this gene has not been completed yet. It is currently ongoing.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
2001Somatic reversion11290809Authors report a 32-yo male diagnosed at age 1 with WAS. He inherited a c.354A>G (p.Y107C) mutation from his mother. The study showed that the patient had a small population of lymphocytes expressing WASP besides a major population with reduced WASP expression. This was due to in vivo reversion.
2015Uniparental disomy25633059Report of a 6-mo female infant diagnosed with WAS, who carried a maternally inherited heterozygous 10-bp deletion (p.Ala426GlyfsX15) at exon 10. Her leukocytes did not express WASP, but her mother's did. They observed a skewed X inactivation of the wildtype WAS copy in the girl, which the authors attributed to the maternal uniparental isodisomy of chromosome 6.
2010Somatic reversion20159256second-site mutation
2008Somatic reversion18941616multiple second-site mutations
2008Mosaicism18479478
2010Somatic reversion20123155multiple reversions
2008Somatic reversion18332229multiple reversions
2007Somatic reversion17690954back mutation or second-site mutation
2007Somatic reversion17405757back mutation
1998Somatic reversion9657775second-site mutation
2005Somatic reversion15985539back mutation (1-bp del)
2004Somatic reversion14504083second-site mutation (19-bp del)
2004Somatic reversion15142877DNA slippage (6-bp del)
2015Somatic reversion25862925back mutation
2006Somatic reversion16511828second-site mutation
2001Somatic reversion11447283DNA slippage (6-bp del)
2003Somatic reversion12727931second-site mutation (19-bp del)
2007Somatic reversion17218989back mutation (1-bp ins)
-Cryptic splicing-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.

References linked to variants in WAS

ID Year Title Journal PMID Variants
118 2021 Establishing the Molecular Diagnoses in a Cohort of 291 Pati... Front. Immunol. 34975878 1
373 2017 Application of whole-exome sequencing to direct the specific... Br. J. Haematol. 28748566 1
425 2014 Germline variation in cancer-susceptibility genes in a healt... Plos Gen. 24728327 1
562 2013 X-linked thrombocytopenia in a female with a complex familia... Blood Cells Mol. Dis. 23689198 1
563 2007 Detection of 28 novel mutations in the Wiskott-Aldrich syndr... Blood Cells Mol. Dis. 17400488 1
749 2022 Radiosensitivity in patients affected by ARPC1B deficiency: ... Front. Immunol. 35967303 2

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